Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006853.1 Corchorus capsularis cultivar CVL-1 contig06874, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71138

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
373--592
64
3.4
64
91
3
352
22
23
16
37
1.94
1260--1297
18
2.1
18
100
0
76
21
10
23
44
1.83
7871--7973
29
3.7
29
86
8
144
24
31
25
19
1.98
22680--22717
12
3.3
12
78
14
53
76
7
5
10
1.15
22676--22717
10
4.1
10
80
14
50
73
9
4
11
1.22
22669--22717
22
2.2
21
92
7
80
73
8
4
14
1.21
23909--24093
80
2.3
80
89
0
289
50
5
19
23
1.69
23912--24093
40
4.5
41
74
6
176
51
6
18
24
1.69
24201--24275
34
2.2
34
83
4
89
50
1
22
25
1.57
24288--24391
35
2.9
35
83
8
138
55
4
25
14
1.58
24278--24378
7
14.1
7
66
8
51
52
4
27
14
1.62
24345--24540
14
13.3
14
67
18
67
55
2
22
19
1.56
24426--24502
7
10.7
7
79
10
84
58
1
24
15
1.45
24437--24545
36
3.1
37
85
8
140
55
2
23
17
1.54
24587--24644
30
1.9
30
92
0
98
58
6
18
15
1.59
24642--24705
31
2.1
31
84
0
83
70
1
15
12
1.24
24584--24743
58
2.8
57
75
17
145
62
3
19
15
1.45
28013--28051
21
1.9
19
85
10
51
43
20
10
25
1.83
30260--30308
25
2.0
25
91
0
80
44
8
12
34
1.71
36242--36273
11
2.9
11
100
0
64
9
28
46
15
1.77
39575--39606
15
2.1
15
94
0
55
34
0
6
59
1.23
44650--44690
22
1.9
22
85
5
57
46
0
24
29
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48350--48412
22
2.7
23
76
14
67
79
4
6
9
1.05
51921--51960
21
1.9
21
84
0
53
25
2
10
62
1.39
58715--58739
8
3.1
8
100
0
50
64
0
12
24
1.27
67480--67516
19
2.0
18
89
5
56
40
8
21
29
1.82
69452--69555
33
3.2
32
85
8
129
9
25
42
22
1.84

Tables:   1

The End!