genome.fa.s6856.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006856.1 Corchorus capsularis cultivar CVL-1 contig06877, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110061

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2494--2556	31	2.0	31	87	6	92	25	19	26	28	1.98
6453--6501	24	2.0	24	92	0	80	36	36	8	18	1.81
8818--9132	169	1.9	170	89	2	499	45	6	6	41	1.56
9796--9870	33	2.3	32	84	4	96	16	32	42	9	1.79
9955--10060	33	3.3	31	76	10	106	12	35	34	16	1.87
28340--28416	40	1.9	40	100	0	154	38	5	22	33	1.76
32524--33564	442	2.4	435	80	5	1207	43	12	13	31	1.81
44986--45162	32	5.5	32	80	4	194	25	16	25	32	1.97
46868--46899	2	17.0	2	87	12	50	50	0	0	50	1.00
53839--53866	11	2.5	11	100	0	56	53	0	46	0	1.00
53917--53998	44	1.9	43	82	9	105	42	1	35	20	1.60
54139--54202	28	2.2	28	89	8	94	48	1	12	37	1.51
54221--54279	30	2.0	30	93	0	100	47	0	11	40	1.40
54267--54340	14	5.1	14	78	12	87	52	1	8	37	1.40
54267--54345	30	2.8	27	80	12	95	51	1	7	39	1.38
54237--54354	44	2.7	44	84	5	166	48	0	11	39	1.44
54655--54762	32	3.4	32	79	1	101	18	20	22	38	1.93
56239--56318	27	3.0	27	90	0	115	15	21	26	37	1.92
56250--56335	27	3.2	27	86	3	84	15	19	25	39	1.91
59805--59908	39	2.6	39	83	9	111	51	3	20	24	1.63
59906--59946	16	2.6	16	88	7	57	56	4	24	14	1.58
60020--60101	21	3.9	21	80	7	103	53	7	17	21	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60152--60218	27	2.5	27	83	7	82	64	0	19	16	1.30
61411--61447	17	2.2	17	95	0	65	32	10	0	56	1.34
61387--61438	27	1.9	27	84	0	68	28	7	1	61	1.34
86221--86322	45	2.3	45	91	0	168	27	21	22	28	1.99
89679--89717	12	3.2	12	77	0	51	43	0	35	20	1.52
90247--90373	68	1.9	67	90	1	200	46	11	18	23	1.82
90606--90638	10	3.4	10	83	8	50	15	39	0	45	1.46
90601--90638	19	2.0	19	100	0	76	15	36	0	47	1.46
91580--91723	72	2.0	72	97	0	270	22	28	25	22	1.99
98172--98239	24	2.8	24	84	2	73	4	27	10	57	1.51
101656--101723	31	2.2	31	86	0	91	30	20	20	27	1.98
101733--101782	16	3.0	17	72	16	59	26	12	24	38	1.90
102450--102526	23	3.2	23	63	22	59	40	9	9	41	1.68
102393--102587	49	3.9	49	92	4	293	37	9	10	42	1.71
104979--105032	21	2.6	21	88	2	74	7	33	33	25	1.84

Tables:   1

The End!