Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006857.1 Corchorus capsularis cultivar CVL-1 contig06878, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14300
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33


Found at i:61 original size:27 final size:27

Alignment explanation


    Indices: 2--61  Score: 75
    Period size: 27  Copynumber: 2.2  Consensus size: 27

          1 T

                                     **
          2 AAAATGACCAAAATGCCCCTAAATGTG
          1 AAAATGACCAAAATGCCCCTAAATGCA

             *                * *      
         29 AGAATGACCAAAATGCCCTTGAATGCA
          1 AAAATGACCAAAATGCCCCTAAATGCA

                  
         56 AAAATG
          1 AAAATG

         62 CCCCTAGGTG


Statistics
Matches: 27,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.45, C:0.20, G:0.17, T:0.18


Consensus pattern (27 bp):   
AAAATGACCAAAATGCCCCTAAATGCA

Found at i:7560 original size:21 final size:21

Alignment explanation


    Indices: 7515--7560  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       7505 GCGCTGGGGG

                          * *   *
       7515 CCCATGTGGTATGCTTGGCGC
          1 CCCATGTGGTATGCCTCGCGA

                      *          
       7536 CCCATGTGGTTTGCCTCGCGA
          1 CCCATGTGGTATGCCTCGCGA

                
       7557 CCCA
          1 CCCA

       7561 ATTACTCCAG


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.11, C:0.35, G:0.28, T:0.26


Consensus pattern (21 bp):   
CCCATGTGGTATGCCTCGCGA
Done.