genome.fa.s6858.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006858.1 Corchorus capsularis cultivar CVL-1 contig06879, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40410

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2434--2461	12	2.3	12	100	0	56	17	7	25	50	1.72
5984--6014	2	15.5	2	100	0	62	51	0	0	48	1.00
7445--7488	21	2.2	20	83	4	52	56	4	6	31	1.46
12505--12563	27	2.1	28	90	3	93	49	5	13	32	1.64
12836--12861	9	2.9	9	100	0	52	57	30	0	11	1.34
17174--17329	26	5.7	26	74	12	118	21	20	4	53	1.63
17174--17384	56	4.0	52	73	14	152	20	22	4	53	1.63
17255--17328	27	2.8	24	77	20	67	24	18	2	54	1.57
17320--17360	19	2.2	19	90	0	64	14	29	2	53	1.54
17339--17390	27	2.0	27	88	3	79	21	25	3	50	1.65
17455--17512	27	2.1	27	93	0	98	18	20	3	56	1.56
17466--17523	17	3.9	16	72	23	54	18	20	3	56	1.56
17374--17497	55	2.3	54	78	9	128	18	22	3	55	1.57
17586--17626	22	1.9	21	90	5	64	19	7	4	68	1.32
17685--17737	20	2.7	19	88	8	79	22	18	5	52	1.66
17744--17849	43	2.5	43	87	0	158	26	22	3	47	1.68
17863--17932	20	3.5	20	84	15	83	22	20	4	52	1.63
17751--17955	22	9.5	22	69	14	72	24	21	3	50	1.65
17992--18056	20	3.2	20	88	0	94	23	26	1	49	1.59
17958--18032	33	2.2	33	79	11	80	18	25	4	52	1.63
21109--21217	50	2.2	50	81	6	123	37	14	11	36	1.82
31699--31817	63	1.9	63	98	0	229	43	21	8	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31783--31856	38	1.9	38	91	5	123	44	25	5	24	1.75
31717--31851	20	6.8	20	65	18	75	42	22	8	25	1.81
35436--35664	27	8.4	26	74	13	169	21	23	3	51	1.61
35516--35647	57	2.4	56	82	11	157	21	24	2	51	1.59
35540--35593	16	3.4	16	70	19	51	22	20	0	57	1.41
35698--35769	27	2.7	27	89	6	112	16	23	2	56	1.53
35709--35766	17	3.9	16	74	23	63	17	22	3	56	1.55
35638--35767	63	2.0	65	85	4	174	17	25	2	54	1.55
35725--35807	37	2.2	36	79	10	96	14	26	2	56	1.51
35679--35807	63	2.0	63	81	11	149	16	24	3	55	1.55
35828--35915	44	2.0	45	82	8	110	22	13	4	59	1.53
35928--35980	20	2.7	19	88	8	79	22	18	5	52	1.66
35911--36197	22	13.5	22	74	11	147	21	21	4	51	1.67
35987--36099	43	2.6	43	88	0	172	23	21	4	51	1.66
36105--36174	20	3.5	19	84	15	72	21	20	5	52	1.66
36237--36280	20	2.2	20	91	0	70	22	27	4	45	1.72

Tables:   1

The End!