Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006859.1 Corchorus capsularis cultivar CVL-1 contig06880, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38766

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1419--1479
30
2.0
31
93
3
106
47
9
24
18
1.78
1761--1785
2
12.5
2
100
0
50
52
0
0
48
1.00
3635--3747
56
2.0
56
100
0
226
27
10
24
37
1.88
4061--4333
136
2.0
136
98
0
528
24
18
21
35
1.95
8382--9336
35
27.6
35
82
6
1008
32
18
10
38
1.86
8600--8655
17
3.2
17
73
14
51
41
10
8
39
1.71
8556--8786
19
13.1
19
67
21
92
34
14
9
41
1.78
9985--10115
50
2.6
49
84
8
156
33
18
4
43
1.70
10048--10170
51
2.4
51
83
0
138
35
19
2
42
1.65
13526--14380
447
1.9
447
97
0
1602
35
16
20
27
1.94
17540--17576
19
2.0
19
89
5
58
45
8
16
29
1.76
26782--26871
23
3.7
23
72
13
81
25
27
16
30
1.97
26767--26866
51
2.0
51
93
0
173
30
24
17
29
1.97
27982--28246
86
3.2
85
62
22
209
24
20
10
44
1.82
28069--28109
18
2.2
19
95
4
75
12
31
0
56
1.36
27944--28262
162
2.0
162
98
0
611
25
21
9
43
1.83
28937--29022
29
3.0
29
98
0
163
33
16
22
27
1.95
29096--29168
32
2.2
33
85
2
94
47
4
24
23
1.69
31053--31123
27
2.6
27
97
0
133
15
22
26
35
1.94
31530--31637
54
2.0
54
94
0
189
44
15
8
31
1.76
33962--34340
190
2.0
188
98
1
740
46
15
9
28
1.77
36132--36200
25
2.9
25
73
14
65
31
4
0
63
1.14

Tables:   1

The End!