genome.fa.s6862.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006862.1 Corchorus capsularis cultivar CVL-1 contig06883, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101262

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2073--2147	14	5.5	13	72	20	55	49	9	9	32	1.67
3860--4632	37	20.8	37	77	4	779	23	16	16	44	1.86
3922--3971	24	2.0	27	84	11	70	20	18	18	44	1.88
3833--4632	74	10.8	74	90	0	1170	23	16	15	44	1.86
4657--4964	172	1.8	171	87	4	464	37	21	7	34	1.81
4936--5048	34	3.4	34	86	3	142	41	22	7	29	1.80
6174--6341	87	1.9	85	85	8	232	48	4	14	32	1.65
9560--9585	12	2.2	12	100	0	52	30	30	0	38	1.58
10722--10758	18	2.1	18	89	0	56	29	24	13	32	1.93
17887--17911	9	2.8	9	100	0	50	44	8	0	48	1.32
18693--18750	29	1.9	31	86	6	84	55	13	10	20	1.68
18691--18757	31	2.2	29	78	5	80	52	11	14	20	1.74
19041--19074	17	2.0	17	88	11	52	52	0	0	47	1.00
19551--19630	31	2.5	32	89	4	126	36	10	16	37	1.82
22980--23022	23	1.9	22	95	4	77	39	18	6	34	1.78
25275--25316	21	2.0	21	85	0	57	28	9	23	38	1.86
30566--30636	26	2.7	27	78	8	83	38	29	18	14	1.90
32060--32390	166	2.0	167	85	2	443	29	14	17	38	1.89
41412--41445	17	2.1	17	88	5	52	52	0	2	44	1.16
41750--41807	18	3.4	18	79	13	77	53	10	3	32	1.52
41742--41809	33	2.1	33	94	0	118	55	8	4	30	1.50
49764--49931	87	1.9	87	100	0	336	26	15	26	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49980--50016	19	1.9	19	100	0	74	45	27	10	16	1.80
50008--50055	6	8.3	6	86	13	66	14	35	35	14	1.87
50008--50055	17	2.8	18	82	17	66	14	35	35	14	1.87
50008--50055	23	2.1	23	85	14	64	14	35	35	14	1.87
51013--51067	10	5.5	10	75	16	60	29	9	0	61	1.26
54615--54666	27	1.9	27	88	7	79	30	26	13	28	1.94
82267--82298	14	2.1	16	88	11	50	0	12	6	81	0.87
89754--89814	32	1.9	32	93	6	106	14	6	19	59	1.58
90460--90492	4	8.5	4	86	6	50	0	18	3	78	0.87
98563--98596	11	3.2	10	84	15	50	50	17	2	29	1.61
100859--100891	2	16.5	2	100	0	66	51	0	0	48	1.00

Tables:   1

The End!