Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006865.1 Corchorus capsularis cultivar CVL-1 contig06886, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28215

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
204--407
47
4.3
47
91
1
302
47
9
20
23
1.79
368--523
71
2.2
70
82
8
183
50
8
16
25
1.73
439--504
31
2.1
31
88
8
98
48
6
19
25
1.72
622--670
21
2.3
22
82
10
66
61
2
20
16
1.44
723--933
21
9.5
21
72
14
106
52
7
19
20
1.70
799--854
15
3.9
15
76
9
62
57
5
19
17
1.59
774--920
22
6.4
23
72
19
101
55
6
19
19
1.65
6440--6474
3
11.3
3
87
6
52
65
0
31
2
1.07
8933--9015
25
3.3
25
98
0
157
13
24
32
30
1.93
13060--13163
25
4.3
25
93
4
171
14
23
30
31
1.94
15426--15451
2
13.0
2
100
0
52
50
0
0
50
1.00
19997--20051
12
4.5
12
90
4
92
36
16
21
25
1.94
19997--20051
25
2.2
24
93
3
92
36
16
21
25
1.94
22077--22112
10
3.6
10
92
0
54
30
5
25
38
1.78
22223--22261
12
3.6
12
74
25
50
30
15
28
25
1.96

Tables:   1

The End!