genome.fa.s6867.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006867.1 Corchorus capsularis cultivar CVL-1 contig06888, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71835

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10230--10276	11	4.2	11	81	13	51	57	21	2	19	1.51
10230--10273	21	2.0	23	86	8	65	56	22	2	18	1.52
16772--16812	2	20.0	2	95	5	73	48	2	0	48	1.14
17559--17615	26	2.2	26	96	0	105	14	7	15	63	1.51
18337--18508	87	2.0	86	95	2	310	33	15	11	39	1.83
21806--21838	16	2.1	16	88	5	50	21	6	9	63	1.45
24350--24402	16	3.3	16	76	10	54	49	30	13	7	1.69
24594--24702	32	3.4	31	81	5	121	40	33	11	15	1.82
33196--33297	36	2.8	36	78	8	109	49	9	11	29	1.72
32974--33614	318	2.0	318	96	0	1183	37	14	16	31	1.89
33530--34257	72	9.9	72	76	9	553	46	10	14	27	1.78
33514--34257	108	6.8	109	76	9	541	47	10	14	27	1.78
33514--34110	145	4.0	142	80	10	608	46	11	14	26	1.79
33846--34016	85	2.0	83	84	6	220	49	13	12	25	1.77
33883--33976	49	1.9	48	89	2	143	50	13	12	23	1.76
33811--34052	122	2.0	118	85	4	324	48	12	13	25	1.77
33940--34219	36	7.8	36	81	4	228	45	9	15	30	1.77
33775--34073	157	1.9	157	86	4	433	47	12	13	26	1.79
33747--34102	194	1.8	193	86	6	524	46	12	14	27	1.79
37177--37380	108	1.9	109	95	1	374	33	9	23	32	1.88
42344--42382	16	2.4	16	100	0	78	46	15	28	10	1.78
46100--46145	16	2.7	17	75	18	51	23	6	6	63	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46635--46669	13	2.5	15	86	13	56	0	14	42	42	1.45
48049--48170	39	3.0	39	93	4	199	41	18	10	28	1.84
47968--48340	72	5.0	72	77	13	378	37	17	10	33	1.85
50740--50783	20	2.2	20	95	0	79	27	4	47	20	1.69
68771--68807	2	18.5	2	94	0	65	45	0	2	51	1.15

Tables:   1

The End!