Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006870.1 Corchorus capsularis cultivar CVL-1 contig06891, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18666

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--37
1
37.0
1
94
0
65
0
0
2
97
0.18
2799--2885
44
2.0
44
86
4
122
41
8
12
37
1.73
2826--2902
22
3.5
21
76
13
75
41
10
11
36
1.76
2799--2876
22
3.5
22
74
19
81
39
8
11
39
1.73
2803--2902
44
2.3
44
82
3
121
41
10
13
36
1.77
2908--2972
22
3.0
22
83
0
85
43
9
16
30
1.80
2924--2987
22
2.6
25
76
16
71
46
7
21
23
1.77
3000--3041
21
2.0
21
86
13
59
38
2
26
33
1.69
3155--3299
22
6.6
22
76
3
121
33
13
15
38
1.86
3153--3278
44
2.9
44
85
2
155
33
13
15
37
1.87
10029--10059
1
31.0
1
100
0
62
0
0
0
100
0.00
12419--12532
6
19.2
6
74
20
89
67
0
2
28
1.10
12425--12536
17
6.5
15
77
18
71
67
0
2
28
1.10
12425--12538
4
29.2
4
66
26
59
68
0
2
28
1.09
12410--12532
59
2.1
59
90
6
196
66
1
3
28
1.16
13869--14035
85
2.0
84
86
3
237
47
22
3
25
1.67

Tables:   1

The End!