Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006871.1 Corchorus capsularis cultivar CVL-1 contig06892, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 19900
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:8513 original size:38 final size:39

Alignment explanation


    Indices: 8459--8535  Score: 129
    Period size: 38  Copynumber: 2.0  Consensus size: 39

       8449 AAAATCAGCT

                       *                           
       8459 TTTGACACAAATTAAGACTTATTTGGTATTGAGTTTTAG
          1 TTTGACACAAACTAAGACTTATTTGGTATTGAGTTTTAG

                                    *              
       8498 TTTGA-ACAAACTAAGACTTATTTTGTATTGAGTTTTAG
          1 TTTGACACAAACTAAGACTTATTTGGTATTGAGTTTTAG

       8536 GTGAAAAACA


Statistics
Matches: 36,  Mismatches: 2, Indels: 1
        0.92            0.05        0.03

Matches are distributed among these distances:
  38   31  0.86
  39    5  0.14

ACGTcount: A:0.31, C:0.08, G:0.17, T:0.44


Consensus pattern (39 bp):   
TTTGACACAAACTAAGACTTATTTGGTATTGAGTTTTAG

Found at i:18972 original size:4 final size:4

Alignment explanation


    Indices: 18963--18987  Score: 50
    Period size: 4  Copynumber: 6.2  Consensus size: 4

      18953 TAGTATTGTT

                                           
      18963 ATTA ATTA ATTA ATTA ATTA ATTA A
          1 ATTA ATTA ATTA ATTA ATTA ATTA A

      18988 ATTATTTGAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   21  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (4 bp):   
ATTA

Done.