Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006874.1 Corchorus capsularis cultivar CVL-1 contig06895, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36765

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3674--3705
3
10.7
3
100
0
64
68
0
0
31
0.90
3840--4055
75
2.9
75
83
2
290
37
9
21
31
1.85
4573--4643
19
3.5
19
70
17
61
39
8
16
35
1.79
4529--4668
45
3.2
44
90
4
219
39
8
16
35
1.79
4988--5034
15
3.2
14
77
17
51
80
0
17
2
0.80
5684--5782
50
2.0
50
87
0
144
36
16
11
36
1.84
6252--6677
70
6.1
70
87
2
549
25
26
18
29
1.98
6252--6685
141
3.1
141
87
3
560
26
26
18
29
1.98
11326--11481
32
4.8
32
86
6
222
28
21
7
42
1.80
11329--11504
68
2.6
67
89
5
243
29
20
7
42
1.79
11501--12436
41
23.1
40
88
4
1265
22
20
10
47
1.80
12426--12674
37
6.6
37
88
4
349
26
17
10
45
1.80
12426--12674
114
2.2
112
90
5
387
26
17
10
45
1.80
12655--12764
40
2.7
41
87
2
159
26
17
10
45
1.81
13247--13281
18
1.9
18
88
0
52
20
34
0
45
1.51
16721--16750
15
2.0
15
93
0
51
20
10
26
43
1.83
21991--22020
15
2.0
15
93
0
51
20
10
26
43
1.83
34546--34590
21
2.1
21
83
0
54
17
20
28
33
1.95

Tables:   1

The End!