genome.fa.s6876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006876.1 Corchorus capsularis cultivar CVL-1 contig06897, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44197

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3424--3575	36	4.2	36	85	6	209	29	19	10	40	1.85
3437--3589	73	2.1	74	93	3	274	28	21	10	39	1.86
3586--3652	32	2.1	32	88	5	100	23	25	11	38	1.89
3666--3770	35	2.9	35	81	7	95	25	10	13	50	1.73
3708--3791	36	2.4	36	84	7	102	27	11	13	47	1.77
3760--3918	77	2.1	77	89	2	239	22	18	12	46	1.82
3773--3920	41	3.8	40	77	12	171	20	19	13	45	1.84
3911--3994	42	2.2	39	81	12	93	22	20	8	48	1.76
3922--4153	45	5.2	43	83	10	263	23	15	11	48	1.78
3922--4153	90	2.6	88	87	6	317	23	15	11	48	1.78
4179--4506	37	8.9	37	89	1	482	27	19	7	45	1.78
9630--9675	24	1.9	24	81	0	56	6	30	10	52	1.62
17159--17249	2	47.5	2	72	16	68	46	4	2	47	1.35
17153--17244	22	4.1	21	74	16	78	44	4	3	47	1.39
19256--19295	21	1.9	21	85	10	55	27	5	12	55	1.58
19453--19491	21	1.9	21	89	5	62	25	2	17	53	1.56
21838--22324	54	9.0	54	87	3	658	29	16	20	33	1.94
22278--22368	46	2.0	46	84	0	119	30	16	24	28	1.96
22422--22500	35	2.3	35	88	0	113	30	13	22	32	1.93
22517--22584	35	1.9	35	87	0	100	30	16	19	33	1.93
22432--22606	78	2.2	78	82	1	206	28	15	25	30	1.96
22594--22748	81	1.9	81	94	0	274	28	14	25	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22671--23543	90	9.6	91	81	7	590	27	15	26	31	1.95
22767--23543	179	4.3	179	85	3	899	27	15	26	31	1.96
22665--23543	270	3.2	268	84	5	1029	27	15	26	31	1.95
22767--23543	90	8.7	89	82	3	812	27	15	26	31	1.96
25583--25643	5	12.4	5	84	3	79	18	1	3	77	0.99
30530--30557	2	14.0	2	100	0	56	50	0	0	50	1.00
31591--31629	18	2.2	17	86	13	53	56	5	0	38	1.22
32443--32477	17	2.1	17	100	0	70	25	5	22	45	1.74
42345--42382	19	2.0	20	89	5	60	10	13	28	47	1.76

Tables:   1

The End!