Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000688.1 Corchorus capsularis cultivar CVL-1 contig00688, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 835

Length: 1393
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36


Found at i:754 original size:16 final size:16

Alignment explanation


    Indices: 729--761  Score: 57
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        719 CGCTGGACCC

                            
        729 ACAAGAGACAAACGTT
          1 ACAAGAGACAAACGTT

                 *          
        745 ACAAGTGACAAACGTT
          1 ACAAGAGACAAACGTT

             
        761 A
          1 A

        762 ACTTACTTAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.48, C:0.18, G:0.18, T:0.15


Consensus pattern (16 bp):   
ACAAGAGACAAACGTT
Done.