Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006880.1 Corchorus capsularis cultivar CVL-1 contig06901, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55489

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2350--2419
27
2.6
26
84
4
77
41
22
15
20
1.90
3028--3070
22
2.0
22
90
0
68
44
23
16
16
1.86
12001--12039
18
2.2
18
90
0
60
17
48
15
17
1.81
14966--15094
66
2.0
66
90
6
208
41
7
7
43
1.62
15545--15588
21
2.2
20
83
4
52
56
4
6
31
1.46
17429--17465
3
12.3
3
100
0
74
32
0
0
67
0.91
17740--17785
21
2.2
21
96
0
83
36
10
17
34
1.85
17015--18557
793
1.9
791
86
5
2175
38
11
12
38
1.79
20730--20780
24
2.1
24
82
7
59
23
49
13
13
1.78
22814--22849
2
19.0
2
88
11
58
50
0
0
50
1.00
22939--22989
15
3.3
15
75
20
59
17
5
33
43
1.73
22930--23016
32
2.7
32
89
3
122
19
8
31
41
1.80
22934--23020
16
5.4
16
74
10
79
20
6
29
42
1.78
23556--23582
13
2.1
13
100
0
54
51
7
14
25
1.68
31939--31964
8
3.2
8
100
0
52
38
0
0
61
0.96
36923--37006
39
2.1
39
97
2
159
22
10
7
59
1.55
37407--37518
50
2.2
50
82
6
145
49
18
12
19
1.79
39507--39571
34
1.9
34
87
0
94
55
7
15
21
1.65
44014--44053
20
2.0
20
90
0
62
15
5
12
67
1.38
46688--46725
12
3.3
12
85
14
62
55
0
0
44
0.99
46690--46728
10
3.8
10
84
15
53
53
0
0
46
1.00
48526--48763
48
4.9
48
87
6
302
44
5
15
35
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48514--48763
96
2.5
99
87
7
341
44
5
15
35
1.69
48526--49017
51
9.9
50
81
7
309
44
5
15
35
1.70
48526--49017
101
4.9
99
79
11
404
44
5
15
35
1.70
50768--50802
17
2.0
18
88
5
54
45
34
14
5
1.68
51162--51186
12
2.1
12
100
0
50
60
32
8
0
1.26
52639--52668
15
2.0
15
93
0
51
43
10
13
33
1.77
52742--52843
49
2.1
49
98
0
195
36
10
24
28
1.89

Tables:   1

The End!