Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006882.1 Corchorus capsularis cultivar CVL-1 contig06903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85019

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2126--2213
44
2.0
45
86
8
126
27
19
11
42
1.85
2522--2571
27
1.9
26
88
8
75
56
4
20
20
1.58
7078--7220
2
71.5
2
85
0
124
41
46
10
2
1.50
7079--7220
40
3.5
40
90
7
234
40
46
10
2
1.50
7081--7220
38
3.6
38
90
7
226
40
46
10
2
1.51
7078--7220
42
3.5
42
90
6
231
41
46
10
2
1.50
18153--18188
16
2.2
17
95
5
65
58
11
19
11
1.62
24987--25037
27
1.9
27
88
4
77
29
19
1
49
1.60
34142--34221
29
2.7
30
75
12
85
37
13
13
35
1.85
46794--46836
15
2.8
16
78
7
52
13
13
32
39
1.85
47326--47358
2
16.5
2
100
0
66
51
0
0
48
1.00
47478--47648
83
2.0
86
92
4
287
36
9
1
53
1.41
48828--48870
13
3.3
13
87
9
61
60
18
6
13
1.55
50344--50374
13
2.4
13
94
0
53
51
6
9
32
1.60
53590--53622
15
2.2
15
89
10
50
39
0
0
60
0.97
59568--59643
39
1.9
39
89
5
118
53
1
11
32
1.45
59493--59714
109
2.0
111
96
2
412
53
1
9
36
1.42
60630--60667
11
3.5
11
89
10
51
39
0
2
57
1.12
62079--62235
31
5.4
31
77
13
134
17
22
26
33
1.96
62127--62229
53
1.9
53
88
0
152
16
21
26
35
1.94
74289--74492
49
4.2
49
87
0
255
31
15
29
23
1.95
75192--75355
81
2.0
81
98
0
319
42
17
18
21
1.89

Tables:   1

The End!