Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006883.1 Corchorus capsularis cultivar CVL-1 contig06904, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45904

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1534--1579
22
2.0
24
91
8
78
45
4
19
30
1.70
1761--1813
22
2.4
22
87
0
70
54
1
20
22
1.54
1881--1992
22
5.2
21
75
12
66
57
8
19
14
1.63
1857--2088
43
5.2
42
72
16
164
56
7
19
15
1.63
1868--2088
21
9.9
22
73
14
150
57
7
19
14
1.61
1857--2094
44
5.3
44
76
12
184
56
7
19
15
1.63
2068--2115
14
3.4
14
85
5
69
54
6
16
22
1.65
1956--2112
73
2.2
71
81
10
176
56
8
19
16
1.65
2236--2291
27
2.0
28
86
3
78
58
0
25
16
1.37
3124--3157
16
2.2
16
89
5
52
58
8
2
29
1.43
13122--13186
17
3.8
17
83
0
76
35
15
27
21
1.94
15121--15152
2
16.0
2
93
0
55
46
3
0
50
1.17
15284--15407
66
1.9
66
89
0
194
21
21
18
37
1.94
16075--16108
2
17.0
2
100
0
68
50
0
0
50
1.00
16647--16688
22
1.9
22
90
0
66
7
14
38
40
1.73
16801--16967
85
2.0
85
86
1
235
19
13
16
50
1.78
17766--17800
16
2.1
17
89
5
54
42
11
14
31
1.81
17769--17869
51
2.0
50
86
1
139
29
8
15
45
1.77
19035--19148
22
5.2
22
74
6
88
42
13
9
35
1.77
19308--19368
22
2.7
23
77
7
63
37
16
3
42
1.64
20638--20683
23
2.0
24
82
4
58
45
2
13
39
1.55
20726--20772
2
23.0
2
86
4
67
51
0
4
44
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21038--21070
2
16.5
2
100
0
66
48
0
0
51
1.00
24091--24145
17
3.2
17
84
0
65
25
21
16
36
1.94
27811--27988
92
1.9
92
97
0
338
55
12
12
19
1.68
33589--33615
13
2.1
13
100
0
54
18
22
51
7
1.70
38577--38601
2
12.5
2
100
0
50
0
0
48
52
1.00
40679--40749
36
2.0
34
86
5
97
14
39
35
11
1.81
40832--40877
18
2.6
18
83
16
60
65
0
26
8
1.21
43572--43608
17
2.1
18
95
5
67
27
10
35
27
1.90
44848--44880
14
2.4
14
90
10
50
72
9
0
18
1.10

Tables:   1

The End!