Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006885.1 Corchorus capsularis cultivar CVL-1 contig06906, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106627

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
556--612
29
2.0
29
93
6
98
31
19
28
21
1.97
568--630
29
2.2
29
83
11
76
34
20
28
15
1.94
1523--1547
13
1.9
13
100
0
50
60
8
8
24
1.52
1874--1937
27
2.3
28
76
12
69
25
12
4
57
1.54
5119--5529
156
2.6
154
77
9
431
30
16
20
32
1.94
5836--5906
28
2.6
27
93
2
115
29
16
26
26
1.97
5840--5906
27
2.4
28
92
2
109
29
17
26
25
1.98
13048--13076
10
2.9
10
100
0
58
20
10
20
48
1.79
29487--29523
19
2.0
18
89
5
56
29
21
8
40
1.82
34909--34947
17
2.4
17
91
4
62
28
7
2
61
1.37
49957--49995
20
2.0
20
85
5
53
28
23
5
43
1.75
53279--53353
29
2.6
28
73
19
75
70
6
9
13
1.32
66028--66073
21
2.2
21
88
0
65
28
28
34
8
1.87
67381--67455
30
2.5
31
80
6
91
12
30
29
28
1.92
68405--68479
30
2.5
31
82
6
100
12
30
30
26
1.92
73028--73059
2
16.0
2
100
0
64
50
0
0
50
1.00
84095--84125
15
2.1
15
93
0
53
45
6
29
19
1.75
84252--84292
2
21.5
2
82
9
50
43
4
0
51
1.23
85692--85784
43
2.2
43
96
0
168
27
19
15
37
1.91
87512--87564
18
2.9
18
70
10
54
45
13
33
7
1.71
87868--87962
25
3.4
25
67
22
73
42
16
9
31
1.81
87856--87989
59
2.3
59
100
0
268
42
18
8
30
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87893--87989
34
3.1
34
64
29
97
43
17
8
30
1.78
93063--93113
26
1.9
27
92
4
86
17
11
39
31
1.86
95477--95524
21
2.3
21
85
0
60
29
27
33
10
1.90
97887--97931
20
2.2
20
84
4
54
66
8
6
17
1.40

Tables:   1

The End!