genome.fa.s6886.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006886.1 Corchorus capsularis cultivar CVL-1 contig06907, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20397

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3247--3398	26	5.8	26	73	16	143	55	7	20	17	1.65
3247--3400	52	2.9	53	87	2	238	55	7	20	16	1.65
3513--3605	40	2.3	40	80	7	100	56	2	22	18	1.51
3564--3687	55	2.2	56	82	5	153	54	6	16	22	1.65
3641--3788	22	6.9	22	82	8	180	54	4	19	21	1.63
3641--3790	64	2.3	64	80	5	169	54	4	20	21	1.63
3762--3831	14	4.9	14	72	6	68	61	2	18	17	1.47
3644--3824	44	4.2	43	85	5	206	55	4	19	20	1.60
3799--3841	21	2.0	21	95	0	77	55	4	20	18	1.60
3806--3852	21	2.2	21	88	7	69	59	4	17	19	1.53
3799--3938	35	4.2	34	70	15	94	54	4	22	19	1.61
7486--7628	55	2.6	55	93	2	234	42	15	28	13	1.84
9261--9289	10	2.9	10	100	0	58	27	10	31	31	1.90
12325--12476	26	5.8	26	74	16	143	53	8	21	17	1.70
12325--12478	52	2.9	53	87	2	238	53	8	21	16	1.69
12558--12645	35	2.6	34	87	3	122	55	2	22	19	1.54
12534--12908	40	9.7	38	74	16	192	53	3	21	21	1.61
12713--12786	20	3.6	21	81	7	89	51	5	18	24	1.67
12781--12956	22	8.2	22	81	6	175	55	2	19	21	1.56
12774--12804	15	2.1	15	93	0	53	51	9	19	19	1.74
12881--12956	7	10.7	7	77	2	71	59	0	18	22	1.38
12903--12956	14	3.9	14	90	0	90	61	0	20	18	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12938--12977	21	1.9	21	85	10	55	62	2	17	17	1.44
12902--13063	35	4.8	34	72	15	113	55	3	20	19	1.58
17524--17644	33	3.7	33	85	2	154	9	22	42	25	1.82
17593--17674	43	1.9	43	97	0	155	7	23	43	25	1.79

Tables:   1

The End!