genome.fa.s6888.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006888.1 Corchorus capsularis cultivar CVL-1 contig06909, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27157

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7387--7604	22	10.0	22	73	12	137	38	11	14	36	1.82
7702--7781	22	3.8	22	69	15	69	35	10	18	36	1.85
10850--10952	41	2.5	41	96	0	188	28	11	18	41	1.85
11268--11302	16	2.2	16	94	0	61	14	25	14	45	1.82
12325--12389	21	2.8	24	86	11	91	41	9	15	33	1.79
12272--12518	22	11.3	22	71	10	123	40	10	15	33	1.81
12676--12746	22	3.2	22	80	4	72	46	9	14	29	1.76
12776--12862	23	3.7	23	76	13	79	42	6	10	40	1.66
12776--12857	22	3.5	24	82	11	82	42	6	9	41	1.62
16960--17024	30	2.1	31	88	2	96	27	21	3	47	1.65
17150--17231	38	2.2	37	82	6	94	14	15	8	60	1.57
17612--17643	6	5.3	6	100	0	64	50	34	0	15	1.45
17806--17905	22	4.6	21	78	8	110	36	12	18	34	1.87
17806--17905	44	2.3	43	91	5	164	36	12	18	34	1.87
17772--17903	66	2.0	66	82	5	160	36	11	16	35	1.85
17910--17957	22	2.2	22	85	7	62	29	2	18	50	1.59
17820--17923	44	2.3	46	90	6	160	36	12	14	36	1.84
17991--18050	22	2.7	23	79	10	70	38	11	16	33	1.85
18034--18088	22	2.5	22	74	11	58	34	9	21	34	1.85
18141--18395	22	11.6	23	73	12	137	42	9	14	33	1.79
18225--18392	44	3.8	44	76	4	162	41	10	13	34	1.78
18224--18370	66	2.2	66	80	2	161	40	10	14	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18567--18640	22	3.4	22	76	0	85	48	10	13	27	1.75
18669--18771	23	4.5	23	80	6	93	36	8	14	39	1.77
18715--18773	22	2.6	22	83	2	73	37	13	11	37	1.82
18875--19003	22	5.9	21	77	7	123	36	10	16	36	1.84
18872--19004	66	2.0	66	84	5	171	35	10	16	37	1.83
18906--19003	44	2.2	43	91	5	160	35	12	17	34	1.87
18873--19057	22	8.3	22	73	4	120	33	9	17	39	1.82
19134--19191	22	2.6	22	76	10	64	32	8	20	37	1.83
19241--19473	22	10.6	23	73	14	120	42	9	14	34	1.78
19224--19473	44	5.7	44	72	9	183	42	9	14	34	1.78
19723--19802	23	3.5	23	86	1	108	37	8	15	38	1.78
19700--19806	45	2.4	44	80	10	126	40	9	14	36	1.78
19578--19806	22	10.6	21	69	15	119	42	8	14	34	1.76
21329--21418	27	3.3	26	87	4	126	17	11	52	18	1.74
21385--21454	18	3.9	18	73	0	59	12	12	55	18	1.68

Tables:   1

The End!