Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006891.1 Corchorus capsularis cultivar CVL-1 contig06912, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9281

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--42
2
19.0
2
94
0
67
47
0
2
50
1.15
1326--1364
18
2.2
18
100
0
78
46
12
10
30
1.75
5338--5476
69
2.0
69
88
0
206
22
13
15
48
1.80
6712--6757
17
2.7
17
89
0
74
28
50
19
2
1.60
6712--6757
11
4.1
11
83
13
58
28
50
19
2
1.60
6748--6836
16
5.6
15
89
7
124
42
38
14
4
1.66
6709--6757
6
8.5
6
84
8
66
28
48
20
2
1.60
8679--8718
21
2.0
20
85
5
53
27
2
2
67
1.16
8951--8982
2
16.0
2
100
0
64
50
0
0
50
1.00

Tables:   1

The End!