genome.fa.s6892.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006892.1 Corchorus capsularis cultivar CVL-1 contig06913, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57475

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1883--1997	32	3.7	32	81	4	153	46	20	6	25	1.75
1880--2022	32	4.6	32	76	5	141	44	20	6	27	1.77
1880--2022	62	2.3	62	92	0	241	44	20	6	27	1.77
1915--2023	30	3.6	30	79	4	119	44	20	7	27	1.77
2347--2419	33	2.2	34	95	2	130	41	10	36	10	1.76
2466--2491	1	26.0	1	100	0	52	0	0	0	100	0.00
3719--3796	41	1.9	41	86	5	113	32	12	12	42	1.81
3795--3831	13	2.8	13	87	0	56	32	8	43	16	1.77
4498--4528	12	2.5	13	94	5	55	9	48	6	35	1.62
4709--4737	13	2.2	13	100	0	58	44	6	34	13	1.71
9454--9905	30	14.6	30	84	5	492	30	16	18	34	1.93
15911--15985	31	2.4	32	93	2	125	13	12	38	36	1.82
16459--16511	21	2.6	21	87	3	72	28	32	32	7	1.85
22973--23002	6	5.0	6	95	0	51	16	3	16	63	1.44
24824--24876	21	2.6	21	87	3	72	28	32	32	7	1.85
26465--26503	20	2.0	20	85	10	53	35	5	5	53	1.45
26523--26617	15	6.1	15	79	9	77	6	11	29	52	1.62
26523--26593	16	4.5	16	81	8	74	7	12	28	52	1.65
26534--26618	32	2.7	31	81	3	98	7	10	28	54	1.61
26523--26618	16	6.1	15	73	12	70	6	11	29	53	1.61
30838--30870	6	5.5	6	100	0	66	54	15	0	30	1.41
37206--37232	6	4.5	6	100	0	54	55	14	0	29	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38288--38772	160	3.0	160	98	0	943	28	18	22	29	1.97
38901--38938	19	2.1	19	90	5	60	39	21	0	39	1.53
38896--38940	18	2.5	17	82	10	54	33	22	2	42	1.66
39738--39924	36	5.2	36	90	1	268	27	21	10	40	1.86
39746--39965	108	2.0	109	81	6	259	26	23	10	39	1.87
39917--40074	37	4.3	36	79	13	169	25	23	8	41	1.83
39917--40089	74	2.3	74	88	5	235	26	23	8	42	1.82
39935--40089	37	4.2	37	89	0	247	25	23	7	43	1.80
40099--40232	35	3.7	35	88	7	182	24	11	12	50	1.74
40135--40350	71	2.9	71	74	16	170	23	17	12	47	1.80
40239--40501	41	6.4	41	93	1	404	21	21	11	46	1.82
40498--40591	37	2.5	36	86	6	125	27	18	7	46	1.75
42838--42892	28	2.0	28	85	0	74	29	12	23	34	1.92
42855--42952	35	2.8	35	80	0	115	31	9	18	40	1.82
42723--42996	148	1.8	148	86	6	394	33	8	20	37	1.83
42907--42989	43	1.9	44	90	2	132	36	6	19	38	1.76
43274--44066	74	10.7	74	92	0	1289	45	15	16	23	1.85
44827--44987	87	1.9	87	85	2	225	27	21	13	37	1.90
45121--45167	18	2.6	19	76	10	62	2	14	2	80	0.89
45110--45173	33	2.0	32	84	9	85	1	14	3	81	0.89
45114--45173	17	3.7	17	79	14	65	1	15	1	81	0.85
45538--45567	10	2.9	10	95	5	51	0	13	0	86	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45866--45917	14	3.6	14	82	14	54	32	7	11	48	1.68
45880--45917	14	2.6	14	91	4	58	28	7	13	50	1.69
48557--48616	29	2.1	29	100	0	120	48	16	21	13	1.80
49226--49706	41	11.2	41	72	13	314	24	20	11	43	1.85
49349--49462	60	1.9	60	88	0	174	21	21	12	44	1.84
49267--49547	142	2.0	142	83	5	352	23	20	12	43	1.85
49185--49583	183	2.2	184	86	1	541	23	20	12	42	1.86
49326--49515	101	1.9	101	90	2	301	24	21	11	42	1.85
49414--49697	125	2.3	122	86	6	378	24	20	11	43	1.85
53944--54050	33	3.2	33	82	2	126	23	37	28	10	1.88

Tables:   1

The End!