Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006893.1 Corchorus capsularis cultivar CVL-1 contig06914, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59063

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2971--3005
17
2.1
17
94
0
61
51
22
2
22
1.61
11839--11868
15
2.0
15
100
0
60
20
6
20
53
1.67
12751--12784
2
17.0
2
100
0
68
50
0
0
50
1.00
18305--18438
66
2.0
66
94
0
232
35
18
16
29
1.93
21045--21183
69
2.0
69
90
2
217
23
13
15
48
1.80
21909--22230
170
1.9
169
87
1
466
39
16
13
29
1.87
23049--23137
42
2.1
42
89
0
133
14
28
29
28
1.95
25986--26029
23
1.9
23
90
9
72
15
11
0
72
1.11
26831--27090
133
1.9
134
91
1
423
24
19
11
44
1.84
27467--27594
16
7.9
16
70
15
84
32
32
20
14
1.93
27462--27573
32
3.5
31
81
6
136
31
33
21
13
1.92
28108--28189
42
2.0
42
95
0
146
39
18
6
36
1.75
28414--28514
23
4.3
22
71
16
69
32
36
21
8
1.85
28429--28571
16
8.6
16
72
14
110
34
35
20
9
1.84
28429--28567
31
4.7
32
71
17
120
34
36
19
9
1.84
28428--28542
55
2.1
55
86
1
160
34
36
19
9
1.84
29669--29695
2
13.5
2
100
0
54
51
0
0
48
1.00
30928--30989
31
2.0
31
87
0
88
46
8
17
27
1.76
33830--33873
21
2.1
21
95
0
79
47
6
15
29
1.72
34229--34259
2
15.5
2
100
0
62
51
0
0
48
1.00
35740--35779
20
1.9
22
85
10
57
17
10
7
65
1.46
50660--50717
29
2.0
29
93
0
98
39
15
20
24
1.91

Tables:   1

The End!