genome.fa.s6894.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006894.1 Corchorus capsularis cultivar CVL-1 contig06915, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  137249

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357--482	22	5.8	21	74	11	94	36	8	17	37	1.81
361--456	44	2.2	44	81	7	106	35	9	20	34	1.85
604--652	22	2.2	22	85	0	62	36	14	14	34	1.86
689--740	22	2.4	22	83	3	70	44	9	9	36	1.70
846--1294	22	20.6	22	68	14	191	37	10	16	35	1.83
777--1294	44	12.0	44	69	12	229	37	10	16	35	1.83
5107--5133	13	2.1	13	100	0	54	40	14	29	14	1.86
9618--9653	15	2.4	15	95	0	63	25	22	11	41	1.86
11602--11647	22	2.1	22	84	8	58	54	19	13	13	1.71
12598--12846	22	11.5	22	75	12	151	39	14	10	35	1.81
12597--12846	44	5.8	44	76	10	212	39	14	11	35	1.82
12655--12836	65	2.8	65	82	5	199	39	14	10	35	1.81
12930--12971	22	1.9	22	90	0	66	28	26	11	33	1.92
12909--13072	44	3.7	43	70	16	118	34	17	7	40	1.78
23480--23692	22	9.6	23	78	6	163	35	14	10	39	1.80
23481--23694	111	1.9	110	83	2	277	34	14	10	40	1.81
23482--23692	66	3.2	66	76	9	189	35	14	9	40	1.80
33145--33623	246	2.0	244	94	2	854	42	10	19	27	1.84
34414--34447	18	1.9	17	94	5	59	50	23	8	17	1.74
34419--34475	27	2.1	27	83	6	71	49	26	8	15	1.74
37852--37979	64	2.0	64	100	0	256	42	18	20	18	1.90
38513--38543	6	5.2	6	96	0	53	0	19	29	51	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41316--41366	23	2.2	23	85	0	75	45	25	15	13	1.83
41894--41948	20	2.7	21	75	11	60	49	1	0	49	1.11
42029--42072	22	2.0	22	86	8	63	40	11	4	43	1.61
42086--42647	22	25.7	22	69	11	235	36	14	9	38	1.80
42372--42456	23	3.7	23	84	1	100	38	15	7	38	1.74
42692--42739	20	2.4	20	96	0	87	25	18	10	45	1.81
42814--42983	44	3.9	44	76	6	148	35	13	9	41	1.77
42863--42987	66	1.9	66	83	6	164	35	16	8	40	1.79
42811--43005	22	9.0	21	70	14	78	34	14	9	40	1.79
42813--42977	88	1.9	88	82	7	210	34	13	9	42	1.77
42838--43183	22	15.7	21	68	16	141	35	16	9	37	1.82
43219--43266	22	2.2	22	85	7	62	47	22	2	27	1.62
43241--43336	46	2.1	45	81	9	115	39	16	10	33	1.83
43277--43406	22	6.0	21	75	7	107	37	13	10	38	1.79
43277--43400	44	2.8	43	84	6	151	37	12	11	39	1.78
44154--44300	70	2.1	70	94	0	258	44	14	16	23	1.85
44805--44900	38	2.6	37	76	3	102	54	8	20	16	1.68
45187--45217	12	2.7	12	95	5	55	32	0	16	51	1.44
45703--45740	11	3.5	11	85	10	51	57	2	0	39	1.12
51160--51488	162	2.0	163	94	2	570	28	15	18	37	1.92
51512--51539	4	7.0	4	100	0	56	50	0	25	25	1.50
59614--59667	2	25.5	2	89	10	81	46	5	0	48	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65020--65117	51	1.9	51	97	0	187	29	13	23	33	1.93
74849--74881	12	2.6	13	85	9	50	12	0	18	69	1.18
82918--82959	18	2.3	18	87	4	57	85	4	9	0	0.72
84997--85548	156	3.5	155	81	8	613	30	15	20	33	1.94
85876--85941	17	3.9	17	93	0	114	18	34	18	28	1.94
88118--88176	17	3.4	17	68	25	50	40	5	1	52	1.33
88089--88175	36	2.4	36	88	3	129	43	4	3	48	1.40
88106--88164	19	3.2	19	67	26	54	40	6	3	49	1.46
88099--88184	36	2.3	36	88	6	127	44	4	2	48	1.36
103919--104282	174	2.1	173	90	2	568	28	34	20	17	1.95
103917--104249	58	5.7	59	91	3	500	27	34	19	18	1.95
104304--104492	48	4.0	48	90	0	299	40	28	13	16	1.87
104429--104466	20	1.9	20	94	0	67	39	36	13	10	1.79
104304--104482	95	1.9	95	92	1	304	41	27	13	17	1.87
104839--105319	29	16.3	29	79	7	488	31	25	21	21	1.98
105474--105820	29	12.4	29	84	8	422	25	30	23	20	1.99
105461--105820	56	6.4	54	82	11	381	26	30	22	20	1.99
105947--106082	28	5.2	28	73	15	128	29	31	23	15	1.95
109531--110043	255	2.0	255	93	0	882	30	19	17	32	1.95
112200--112621	211	2.0	212	98	0	810	36	18	11	33	1.87
117686--117719	2	17.0	2	100	0	68	50	0	50	0	1.00
133978--134056	30	2.7	29	78	9	88	44	12	12	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134292--134321	2	15.0	2	92	0	51	50	3	0	46	1.18
134479--134550	21	3.4	21	73	3	81	22	8	31	37	1.84
134514--134811	88	3.4	87	73	9	264	23	15	20	40	1.90
134546--134712	87	1.9	88	80	8	198	24	17	18	39	1.92
134691--134734	21	2.0	22	86	8	63	18	15	25	40	1.90
134787--134863	21	3.6	21	77	3	91	23	11	25	38	1.89
137211--137249	20	2.0	19	90	5	60	46	0	2	51	1.14

Tables:   1

The End!