Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006911.1 Corchorus capsularis cultivar CVL-1 contig06932, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14060
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29


Found at i:1333 original size:22 final size:22

Alignment explanation


    Indices: 1281--1327  Score: 76
    Period size: 22  Copynumber: 2.1  Consensus size: 22

       1271 CCATTATACT

                               *  
       1281 ATATCTAATTAATAGATAATTA
          1 ATATCTAATTAATAGATAACTA

                           *      
       1303 ATATCTAATTAATAGTTAACTA
          1 ATATCTAATTAATAGATAACTA

               
       1325 ATA
          1 ATA

       1328 ATTAATAAAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  22   23  1.00

ACGTcount: A:0.49, C:0.06, G:0.04, T:0.40


Consensus pattern (22 bp):   
ATATCTAATTAATAGATAACTA

Found at i:6872 original size:26 final size:26

Alignment explanation


    Indices: 6836--6889  Score: 99
    Period size: 26  Copynumber: 2.1  Consensus size: 26

       6826 AAAATGTGTG

                              *       
       6836 TCAACATAATTCATGTAGTCCAAAAA
          1 TCAACATAATTCATGTAGCCCAAAAA

                                      
       6862 TCAACATAATTCATGTAGCCCAAAAA
          1 TCAACATAATTCATGTAGCCCAAAAA

              
       6888 TC
          1 TC

       6890 TACGAAACGT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.44, C:0.22, G:0.07, T:0.26


Consensus pattern (26 bp):   
TCAACATAATTCATGTAGCCCAAAAA
Done.