Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006913.1 Corchorus capsularis cultivar CVL-1 contig06934, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23149

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
190--214
10
2.5
10
100
0
50
48
20
8
24
1.76
1143--1178
6
6.0
6
100
0
72
33
0
16
50
1.46
1460--1529
35
2.0
35
91
2
115
31
11
7
50
1.65
1575--1641
35
1.9
35
81
0
80
32
11
4
50
1.59
5096--5140
23
2.0
23
86
8
65
8
46
26
17
1.78
15002--15050
24
2.0
24
84
11
64
53
2
0
44
1.12
15114--15149
18
2.0
18
89
10
56
5
33
0
61
1.19
16720--16794
24
3.0
26
84
7
118
26
34
21
17
1.95
18570--18650
32
2.5
33
82
6
103
24
13
35
25
1.92
18736--18787
16
3.2
16
69
0
50
19
9
44
26
1.81
18704--18849
32
4.6
32
88
0
193
20
10
40
28
1.86
19036--19087
16
3.2
16
80
0
68
26
38
21
13
1.90
19188--19463
50
5.5
50
84
6
337
32
17
26
22
1.96
19593--19622
15
2.0
15
93
0
51
26
23
26
23
2.00
19566--19649
42
2.0
42
85
0
114
28
26
26
19
1.98
22380--22581
50
4.0
50
94
3
309
26
36
20
16
1.94
22380--22581
26
8.0
26
87
7
317
26
36
20
16
1.94

Tables:   1

The End!