Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006917.1 Corchorus capsularis cultivar CVL-1 contig06938, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34889

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4867--4894
2
14.0
2
100
0
56
50
0
0
50
1.00
5282--5353
34
2.1
34
86
0
99
34
12
12
40
1.81
11974--12023
2
25.0
2
100
0
100
50
0
50
0
1.00
17309--17377
20
3.7
20
71
25
60
20
21
4
53
1.62
17311--17636
35
9.1
35
68
22
135
17
22
4
56
1.58
17279--17428
81
1.9
81
92
0
255
18
22
4
55
1.59
17384--17576
7
28.9
7
65
20
83
16
23
3
56
1.56
17330--17526
46
4.2
46
88
2
259
16
22
4
56
1.57
17400--17469
20
3.2
20
69
21
59
15
21
5
57
1.59
17453--17493
19
2.2
19
90
0
64
12
21
2
63
1.40
17466--17509
20
2.3
19
84
11
54
15
25
0
59
1.37
17432--17693
81
3.2
81
87
1
373
17
22
3
56
1.56
17512--17600
46
1.9
47
88
2
135
19
22
3
55
1.58
17594--17689
47
2.0
48
86
6
133
15
20
4
59
1.53
17628--17691
28
2.3
27
81
5
74
15
20
1
62
1.40
17681--17752
22
3.3
22
76
7
76
16
18
6
58
1.60
17655--17748
21
4.4
21
75
13
77
15
19
6
58
1.58
17748--17888
21
6.7
21
78
8
119
21
20
5
51
1.68
22552--22642
32
2.8
32
83
0
110
17
8
32
40
1.80
24442--24533
16
5.9
16
66
5
53
9
8
29
52
1.64
33790--33865
29
2.6
29
97
0
143
31
10
25
32
1.89
34036--34075
21
1.9
21
85
10
55
25
37
10
27
1.88

Tables:   1

The End!