Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006918.1 Corchorus capsularis cultivar CVL-1 contig06939, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9965
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.31


Found at i:900 original size:22 final size:21

Alignment explanation


    Indices: 874--919  Score: 56
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        864 TATTCCCCCT

                     *          * 
        874 CCCTTCTATCTTCTAATTTGGC
          1 CCCTTCTATATT-TAATTTGCC

                 *               
        896 CCCTTTTATATTTAATTTGCC
          1 CCCTTCTATATTTAATTTGCC

               
        917 CCC
          1 CCC

        920 ATAATTTTGT


Statistics
Matches: 21,  Mismatches: 3, Indels: 1
        0.84            0.12        0.04

Matches are distributed among these distances:
  21   11  0.52
  22   10  0.48

ACGTcount: A:0.15, C:0.33, G:0.07, T:0.46


Consensus pattern (21 bp):   
CCCTTCTATATTTAATTTGCC
Done.