Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006919.1 Corchorus capsularis cultivar CVL-1 contig06940, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4323
ACGTcount: A:0.30, C:0.15, G:0.18, T:0.36


Found at i:129 original size:14 final size:13

Alignment explanation


    Indices: 95--135  Score: 64
    Period size: 13  Copynumber: 3.1  Consensus size: 13

         85 ATTCCCCAAC

                         
         95 TTTTGAAACAAAT
          1 TTTTGAAACAAAT

                         
        108 TTTTGAAACAAAT
          1 TTTTGAAACAAAT

                     *    
        121 TTTTCGAAAAAAAT
          1 TTTT-GAAACAAAT

             
        135 T
          1 T

        136 GATTTTTGAC


Statistics
Matches: 26,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  13   17  0.65
  14    9  0.35

ACGTcount: A:0.46, C:0.07, G:0.07, T:0.39


Consensus pattern (13 bp):   
TTTTGAAACAAAT

Found at i:1033 original size:14 final size:15

Alignment explanation


    Indices: 1005--1033  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

        995 GTGTGAATTC

                           
       1005 AAATTGATCTTTTGA
          1 AAATTGATCTTTTGA

                           
       1020 AAATTGAT-TTTTGA
          1 AAATTGATCTTTTGA

       1034 TTAACTTAAA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    6  0.43
  15    8  0.57

ACGTcount: A:0.34, C:0.03, G:0.14, T:0.48


Consensus pattern (15 bp):   
AAATTGATCTTTTGA
Done.