Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000692.1 Corchorus capsularis cultivar CVL-1 contig00692, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2076
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33


Found at i:1467 original size:2 final size:2

Alignment explanation


    Indices: 1460--1511  Score: 86
    Period size: 2  Copynumber: 26.0  Consensus size: 2

       1450 AAACCATGCA

                                        *                 *               
       1460 AT AT AT AT AT AT AT AT AT AA AT AT AT AT AT AA AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT

                          
       1502 AT AT AT AT AT
          1 AT AT AT AT AT

       1512 TGCATGCTCT


Statistics
Matches: 46,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   2   46  1.00

ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46


Consensus pattern (2 bp):   
AT

Done.