Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006920.1 Corchorus capsularis cultivar CVL-1 contig06941, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46644

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
465--501
19
2.0
18
89
5
56
27
21
8
43
1.80
10284--10320
19
2.0
18
89
5
56
27
21
8
43
1.80
16713--16757
16
2.8
16
86
0
63
64
22
2
11
1.36
20614--21389
389
2.0
389
98
0
1507
28
8
22
40
1.84
27775--27841
6
11.5
6
84
6
93
0
34
0
65
0.93
27773--27841
17
4.0
17
86
3
93
0
33
0
66
0.92
28667--28704
19
2.0
20
84
5
51
31
7
23
36
1.84
29577--29631
24
2.3
24
90
0
92
32
23
27
16
1.96
29658--29774
27
4.3
27
85
0
153
21
41
17
19
1.91
31991--32024
2
17.0
2
88
11
52
47
2
0
50
1.16
31988--32024
12
3.1
12
92
7
58
43
5
0
51
1.24
33668--33768
33
3.1
33
77
5
105
24
9
23
41
1.85
38228--38563
35
9.7
35
83
3
349
36
9
19
35
1.83
38231--38490
136
1.9
136
88
1
387
36
8
19
35
1.82
40118--40203
30
2.9
30
92
0
145
20
24
22
32
1.98
40583--40699
33
3.5
33
79
4
112
25
41
22
10
1.85

Tables:   1

The End!