Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006925.1 Corchorus capsularis cultivar CVL-1 contig06946, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5271
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.38


Found at i:2724 original size:28 final size:28

Alignment explanation


    Indices: 2684--2740  Score: 114
    Period size: 28  Copynumber: 2.0  Consensus size: 28

       2674 GGGGAGAGGG

                                        
       2684 TAAAAAAAATTGCATTTTTGTTTATGTT
          1 TAAAAAAAATTGCATTTTTGTTTATGTT

                                        
       2712 TAAAAAAAATTGCATTTTTGTTTATGTT
          1 TAAAAAAAATTGCATTTTTGTTTATGTT

             
       2740 T
          1 T

       2741 GCATATTTTT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.35, C:0.04, G:0.11, T:0.51


Consensus pattern (28 bp):   
TAAAAAAAATTGCATTTTTGTTTATGTT

Found at i:3523 original size:12 final size:11

Alignment explanation


    Indices: 3502--3531  Score: 51
    Period size: 12  Copynumber: 2.6  Consensus size: 11

       3492 GTCCCTATGG

                       
       3502 AAAATGAAAAA
          1 AAAATGAAAAA

                        
       3513 AAAAGTGAAAAA
          1 AAAA-TGAAAAA

                   
       3525 AAAATGA
          1 AAAATGA

       3532 TGAAACACTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  11    7  0.39
  12   11  0.61

ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10


Consensus pattern (11 bp):   
AAAATGAAAAA
Done.