Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01006926.1 Corchorus capsularis cultivar CVL-1 contig06947, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 29971
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Found at i:7958 original size:22 final size:22
Alignment explanation
Indices: 7918--7959 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
7908 TTCATATGAA
*
7918 ATTATGATAATCTCTCTATTAG
1 ATTATGATAATCTCACTATTAG
7940 ATTATGATAAT-TACACTATT
1 ATTATGATAATCT-CACTATT
7960 TTTTATGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 1 0.06
22 17 0.94
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (22 bp):
ATTATGATAATCTCACTATTAG
Found at i:8062 original size:22 final size:22
Alignment explanation
Indices: 8037--8078 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8027 GAGAACATTT
*
8037 TTATAAAATTTTTTTAACCTTC
1 TTATAAAATTTTGTTAACCTTC
*
8059 TTATGAAATTTTGTTAACCT
1 TTATAAAATTTTGTTAACCT
8079 CCCTAAGGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.31, C:0.12, G:0.05, T:0.52
Consensus pattern (22 bp):
TTATAAAATTTTGTTAACCTTC
Found at i:10398 original size:17 final size:17
Alignment explanation
Indices: 10378--10410 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
10368 GCAACCTATC
10378 ACCTCATACTACCTAGT
1 ACCTCATACTACCTAGT
10395 ACCTCATACTACCTAG
1 ACCTCATACTACCTAG
10411 GTACTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.36, G:0.06, T:0.27
Consensus pattern (17 bp):
ACCTCATACTACCTAGT
Found at i:20708 original size:9 final size:10
Alignment explanation
Indices: 20663--20710 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
20653 AACCGACTAA
20663 TCGGTTTTGG
1 TCGGTTTTGG
***
20673 TCGGTGGCGG
1 TCGGTTTTGG
*
20683 TCGGTTTCGG
1 TCGGTTTTGG
20693 TCGGTTTTGG
1 TCGGTTTTGG
20703 -CGGTTTTG
1 TCGGTTTTG
20711 ATTTATATTT
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
9 8 0.25
10 24 0.75
ACGTcount: A:0.00, C:0.15, G:0.44, T:0.42
Consensus pattern (10 bp):
TCGGTTTTGG
Found at i:24541 original size:11 final size:11
Alignment explanation
Indices: 24525--24803 Score: 196
Period size: 11 Copynumber: 25.6 Consensus size: 11
24515 TGTCAAAAAA
*
24525 AAGACTGAAAG
1 AAGACTGAAAT
*
24536 AAGACT-AAAA
1 AAGACTGAAAT
* *
24546 AAGACTAAAAAA
1 AAGACT-GAAAT
24558 AAGACTGAAA-
1 AAGACTGAAAT
* *
24568 AA-A-GGAAAG
1 AAGACTGAAAT
*
24577 AAGACTGAAAG
1 AAGACTGAAAT
* *
24588 AAGATTGAAAA
1 AAGACTGAAAT
24599 AAGACTGAAACT
1 AAGACTGAAA-T
24611 -AGACTGAAAT
1 AAGACTGAAAT
* * *
24621 TAGACTGATAG
1 AAGACTGAAAT
24632 AAGACTGAAAT
1 AAGACTGAAAT
* *
24643 TAGACTGAAAA
1 AAGACTGAAAT
* *
24654 AAGAATGATAT
1 AAGACTGAAAT
* *
24665 TAGACTGAAAA
1 AAGACTGAAAT
24676 AAGACT-AATAT
1 AAGACTGAA-AT
* *
24687 TAGACTGATAT
1 AAGACTGAAAT
*
24698 AAGACTGAAAG
1 AAGACTGAAAT
*
24709 AATACTGAAAT
1 AAGACTGAAAT
*
24720 TAGACTGAAA-
1 AAGACTGAAAT
*
24730 ATAGACTGAAAA
1 A-AGACTGAAAT
*
24742 AAGACTGATAT
1 AAGACTGAAAT
*
24753 TAGACTGAAAT
1 AAGACTGAAAT
* *
24764 CAGACTGAAAG
1 AAGACTGAAAT
24775 AAGACTGAAAT
1 AAGACTGAAAT
*
24786 TAGACTGATAA-
1 AAGACTGA-AAT
24797 AAGACTG
1 AAGACTG
24804 GCTTAGTTTC
Statistics
Matches: 211, Mismatches: 45, Indels: 24
0.75 0.16 0.09
Matches are distributed among these distances:
8 4 0.02
9 3 0.01
10 15 0.07
11 175 0.83
12 14 0.07
ACGTcount: A:0.53, C:0.09, G:0.19, T:0.18
Consensus pattern (11 bp):
AAGACTGAAAT
Found at i:24559 original size:12 final size:12
Alignment explanation
Indices: 24519--24570 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
24509 GCTTAATGTC
24519 AAAAAAAAGACT
1 AAAAAAAAGACT
* *
24531 -GAAAGAAGACT
1 AAAAAAAAGACT
24542 --AAAAAAGACT
1 AAAAAAAAGACT
24552 AAAAAAAAGACT
1 AAAAAAAAGACT
24564 GAAAAAA
1 -AAAAAA
24571 GGAAAGAAGA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
10 9 0.26
11 9 0.26
12 10 0.29
13 6 0.18
ACGTcount: A:0.71, C:0.08, G:0.13, T:0.08
Consensus pattern (12 bp):
AAAAAAAAGACT
Found at i:24578 original size:41 final size:41
Alignment explanation
Indices: 24531--24608 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
24521 AAAAAAGACT
24531 GAAAGAAGACT-AAAAAAGACTAAAAAAAAGACTGAAAAAAG
1 GAAAGAAGACTGAAAAAAGA-TAAAAAAAAGACTGAAAAAAG
* **
24572 GAAAGAAGACTGAAAGAAGATTGAAAAAAGACTGAAA
1 GAAAGAAGACTGAAAAAAGATAAAAAAAAGACTGAAA
24609 CTAGACTGAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
41 26 0.79
42 7 0.21
ACGTcount: A:0.64, C:0.06, G:0.21, T:0.09
Consensus pattern (41 bp):
GAAAGAAGACTGAAAAAAGATAAAAAAAAGACTGAAAAAAG
Found at i:24615 original size:33 final size:33
Alignment explanation
Indices: 24526--24803 Score: 228
Period size: 33 Copynumber: 8.5 Consensus size: 33
24516 GTCAAAAAAA
* * **
24526 AGACTGAAAGAAGACT-AAAAAAGACTAAAAAAA
1 AGACTGAAATAAGACTGAAAAAAGACT-GAAATT
* * **
24559 AGACTGAAA-AA-A-GGAAAGAAGACTGAAAGA
1 AGACTGAAATAAGACTGAAAAAAGACTGAAATT
* * **
24589 AGATTGAAAAAAGACTGAAACTAGACTGAAATT
1 AGACTGAAATAAGACTGAAAAAAGACTGAAATT
* * ** **
24622 AGACTGATAGAAGACTGAAATTAGACTGAAAAA
1 AGACTGAAATAAGACTGAAAAAAGACTGAAATT
* * *
24655 AGAATGATATTAGACTGAAAAAAGACT-AATATT
1 AGACTGAAATAAGACTGAAAAAAGACTGAA-ATT
* * *
24688 AGACTGATATAAGACTGAAAGAATACTGAAATT
1 AGACTGAAATAAGACTGAAAAAAGACTGAAATT
*
24721 AGACTGAAA-ATAGACTGAAAAAAGACTGATATT
1 AGACTGAAATA-AGACTGAAAAAAGACTGAAATT
* *
24754 AGACTGAAATCAGACTGAAAGAAGACTGAAATT
1 AGACTGAAATAAGACTGAAAAAAGACTGAAATT
24787 AGACTGATAA-AAGACTG
1 AGACTGA-AATAAGACTG
24804 GCTTAGTTTC
Statistics
Matches: 201, Mismatches: 35, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
30 12 0.06
31 12 0.06
32 6 0.03
33 167 0.83
34 4 0.02
ACGTcount: A:0.53, C:0.09, G:0.19, T:0.18
Consensus pattern (33 bp):
AGACTGAAATAAGACTGAAAAAAGACTGAAATT
Found at i:24842 original size:36 final size:36
Alignment explanation
Indices: 24795--24996 Score: 291
Period size: 36 Copynumber: 5.6 Consensus size: 36
24785 TTAGACTGAT
24795 AAAAGACTGGCTTAGTTTCAAGGAAACTAGGTAAAG
1 AAAAGACTGGCTTAGTTTCAAGGAAACTAGGTAAAG
*
24831 AAAAGACTGGCTTAGTTTCAAGGAAACTAAGTAAAG
1 AAAAGACTGGCTTAGTTTCAAGGAAACTAGGTAAAG
* * * *
24867 AATAGACTGGCTT-GATTTCAAGGAAATTAAGTAAAT
1 AAAAGACTGGCTTAG-TTTCAAGGAAACTAGGTAAAG
*
24903 AAAAGACTGGCTTAGTTTCAAAGAAACTAGGTAAAG
1 AAAAGACTGGCTTAGTTTCAAGGAAACTAGGTAAAG
* *
24939 AAAAGACTGGCTTAATTTCAAGGAAATTAGGTAAA-
1 AAAAGACTGGCTTAGTTTCAAGGAAACTAGGTAAAG
*
24974 AGAAAGACTGGCTTAATTTCAAG
1 A-AAAGACTGGCTTAGTTTCAAG
24997 AAAATTAAGT
Statistics
Matches: 151, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
35 2 0.01
36 148 0.98
37 1 0.01
ACGTcount: A:0.43, C:0.10, G:0.22, T:0.25
Consensus pattern (36 bp):
AAAAGACTGGCTTAGTTTCAAGGAAACTAGGTAAAG
Found at i:24886 original size:72 final size:71
Alignment explanation
Indices: 24795--25034 Score: 322
Period size: 72 Copynumber: 3.4 Consensus size: 71
24785 TTAGACTGAT
* *
24795 AAAAGACTGGCTTAGTTTCAAGGAAACTAGGTAAAGAAAAGACTGGCTTAGTTTCAAGGAAACTA
1 AAAAGACTGGCTTAATTTCAAGGAAATTAGGTAAA-AAAAGACTGGCTTAGTTTCAAGGAAACTA
24860 AGTAAAG
65 AGTAAAG
* * * *
24867 AATAGACTGGCTTGATTTCAAGGAAATTAAGTAAATAAAAGACTGGCTTAGTTTCAAAGAAACTA
1 AAAAGACTGGCTTAATTTCAAGGAAATTAGGTAAA-AAAAGACTGGCTTAGTTTCAAGGAAACTA
*
24932 GGTAAAG
65 AGTAAAG
* * *
24939 AAAAGACTGGCTTAATTTCAAGGAAATTAGGTAAAAGAAAGACTGGCTTAATTTCAAGAAAATTA
1 AAAAGACTGGCTTAATTTCAAGGAAATTAGGTAAAA-AAAGACTGGCTTAGTTTCAAGGAAACTA
25004 AGTAAA-
65 AGTAAAG
* * *
25010 AAGACACAGGCTTAATTTC-AGGAAA
1 AAAAGACTGGCTTAATTTCAAGGAAA
25035 GGAAATTAAG
Statistics
Matches: 148, Mismatches: 19, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
70 6 0.04
71 17 0.11
72 125 0.84
ACGTcount: A:0.45, C:0.10, G:0.21, T:0.24
Consensus pattern (71 bp):
AAAAGACTGGCTTAATTTCAAGGAAATTAGGTAAAAAAAGACTGGCTTAGTTTCAAGGAAACTAA
GTAAAG
Found at i:24973 original size:108 final size:108
Alignment explanation
Indices: 24793--25009 Score: 364
Period size: 108 Copynumber: 2.0 Consensus size: 108
24783 AATTAGACTG
* *
24793 ATAAAAGACTGGCTTAGTTTCAAGGAAACTAGGTAAAGAAAAGACTGGCTTAGTTTCAAGGAAAC
1 ATAAAAGACTGGCTTAGTTTCAAAGAAACTAGGTAAAGAAAAGACTGGCTTAATTTCAAGGAAAC
* *
24858 TAAGT-AAAGAATAGACTGGCTTGATTTCAAGGAAATTAAGTAA
66 TAAGTAAAAGAA-AGACTGGCTTAATTTCAAGAAAATTAAGTAA
*
24901 ATAAAAGACTGGCTTAGTTTCAAAGAAACTAGGTAAAGAAAAGACTGGCTTAATTTCAAGGAAAT
1 ATAAAAGACTGGCTTAGTTTCAAAGAAACTAGGTAAAGAAAAGACTGGCTTAATTTCAAGGAAAC
*
24966 TAGGTAAAAGAAAGACTGGCTTAATTTCAAGAAAATTAAGTAA
66 TAAGTAAAAGAAAGACTGGCTTAATTTCAAGAAAATTAAGTAA
25009 A
1 A
25010 AAGACACAGG
Statistics
Matches: 102, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
108 96 0.94
109 6 0.06
ACGTcount: A:0.45, C:0.10, G:0.21, T:0.25
Consensus pattern (108 bp):
ATAAAAGACTGGCTTAGTTTCAAAGAAACTAGGTAAAGAAAAGACTGGCTTAATTTCAAGGAAAC
TAAGTAAAAGAAAGACTGGCTTAATTTCAAGAAAATTAAGTAA
Found at i:25002 original size:36 final size:35
Alignment explanation
Indices: 24796--25034 Score: 275
Period size: 36 Copynumber: 6.7 Consensus size: 35
24786 TAGACTGATA
* *
24796 AAAGACTGGCTTAGTTTCAAGGAAACTAGGTAAAG
1 AAAGACTGGCTTAATTTCAAGGAAACTAAGTAAAG
*
24831 AAAAGACTGGCTTAGTTTCAAGGAAACTAAGTAAAG
1 -AAAGACTGGCTTAATTTCAAGGAAACTAAGTAAAG
* * *
24867 AATAGACTGGCTTGATTTCAAGGAAATTAAGTAAATA
1 AA-AGACTGGCTTAATTTCAAGGAAACTAAGTAAA-G
* * *
24904 AAAGACTGGCTTAGTTTCAAAGAAACTAGGTAAAG
1 AAAGACTGGCTTAATTTCAAGGAAACTAAGTAAAG
* *
24939 AAAAGACTGGCTTAATTTCAAGGAAATTAGGTAAAAG
1 -AAAGACTGGCTTAATTTCAAGGAAACTAAGT-AAAG
* *
24976 AAAGACTGGCTTAATTTCAAGAAAATTAAGTAAA-
1 AAAGACTGGCTTAATTTCAAGGAAACTAAGTAAAG
* *
25010 AAGACACAGGCTTAATTTC-AGGAAA
1 AA-AGACTGGCTTAATTTCAAGGAAA
25035 GGAAATTAAG
Statistics
Matches: 179, Mismatches: 19, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
34 7 0.04
35 19 0.11
36 147 0.82
37 6 0.03
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.24
Consensus pattern (35 bp):
AAAGACTGGCTTAATTTCAAGGAAACTAAGTAAAG
Found at i:25074 original size:32 final size:31
Alignment explanation
Indices: 25038--25145 Score: 119
Period size: 32 Copynumber: 3.3 Consensus size: 31
25028 CAGGAAAGGA
25038 AATTAAGTAGAATAAAGAACTTAATTCAGTGT
1 AATTAAGTAGAATAAAGAACTTAATTCAG-GT
*
25070 AATTAAGTGAAGTCAATAAA-AGGCTTAATTCAGGGT
1 AATTAAGT--AG--AATAAAGA-ACTTAATTCA-GGT
*
25106 AATTAAGTAGAATAAAGAACTTAATTTAAGGT
1 AATTAAGTAGAATAAAGAACTTAA-TTCAGGT
25138 AATTAAGT
1 AATTAAGT
25146 GAAATCAATA
Statistics
Matches: 65, Mismatches: 3, Indels: 16
0.77 0.04 0.19
Matches are distributed among these distances:
32 30 0.46
33 4 0.06
34 4 0.06
35 1 0.02
36 25 0.38
37 1 0.02
ACGTcount: A:0.46, C:0.06, G:0.18, T:0.31
Consensus pattern (31 bp):
AATTAAGTAGAATAAAGAACTTAATTCAGGT
Found at i:25088 original size:36 final size:35
Alignment explanation
Indices: 25048--25166 Score: 131
Period size: 36 Copynumber: 3.4 Consensus size: 35
25038 AATTAAGTAG
25048 AATAAAGAACTTAATTCAGTGTAATTAAGTGAAGTC
1 AATAAAGAACTTAATTCAG-GTAATTAAGTGAAGTC
*
25084 AATAAA-AGGCTTAATTCAGGGTAATTAAGT--AG--
1 AATAAAGA-ACTTAATTCA-GGTAATTAAGTGAAGTC
* *
25116 AATAAAGAACTTAATTTAAGGTAATTAAGTGAAATC
1 AATAAAGAACTTAA-TTCAGGTAATTAAGTGAAGTC
*
25152 AATAAAGAGCTTAAT
1 AATAAAGAACTTAAT
25167 CTAGAAAAGA
Statistics
Matches: 70, Mismatches: 5, Indels: 17
0.76 0.05 0.18
Matches are distributed among these distances:
32 22 0.31
33 4 0.06
34 3 0.04
35 2 0.03
36 38 0.54
37 1 0.01
ACGTcount: A:0.47, C:0.07, G:0.17, T:0.29
Consensus pattern (35 bp):
AATAAAGAACTTAATTCAGGTAATTAAGTGAAGTC
Found at i:25118 original size:68 final size:68
Alignment explanation
Indices: 25038--25166 Score: 208
Period size: 68 Copynumber: 1.9 Consensus size: 68
25028 CAGGAAAGGA
* *
25038 AATTAAGTAGAATAAAGAACTTAA-TTCAGTGTAATTAAGTGAAGTCAATAAA-AGGCTTAATTC
1 AATTAAGTAGAATAAAGAACTTAATTTAAG-GTAATTAAGTGAAATCAATAAAGA-GCTTAATTC
25101 AGGGT
64 AGGGT
25106 AATTAAGTAGAATAAAGAACTTAATTTAAGGTAATTAAGTGAAATCAATAAAGAGCTTAAT
1 AATTAAGTAGAATAAAGAACTTAATTTAAGGTAATTAAGTGAAATCAATAAAGAGCTTAAT
25167 CTAGAAAAGA
Statistics
Matches: 57, Mismatches: 2, Indels: 4
0.90 0.03 0.06
Matches are distributed among these distances:
68 52 0.91
69 5 0.09
ACGTcount: A:0.47, C:0.06, G:0.17, T:0.29
Consensus pattern (68 bp):
AATTAAGTAGAATAAAGAACTTAATTTAAGGTAATTAAGTGAAATCAATAAAGAGCTTAATTCAG
GGT
Found at i:26561 original size:183 final size:182
Alignment explanation
Indices: 26223--26623 Score: 443
Period size: 183 Copynumber: 2.2 Consensus size: 182
26213 ACTAAACCCC
** *
26223 CTGATTTTTGGCTTAATTAA-CTAATTTTGCCTAAATCACAAAAACCCTAACTCACCAAGCAAGC
1 CTGA-TTTTGGCTTAATTAATC-AATTAGGCCGAAATCACAAAAACCCTAACTCACCAAGCAAGC
* * * *
26287 TAATTTGCCGCCTATGTTGCAATTTTTGCAAAGAAGGGCTCGGCTCATTAGGGGTAGCTTGGTTA
64 CAATTTGCCGCCTAAGTTGCAATTTGTGCAAAAAAGGGCTCGGCTCATTAGGGGTAGCTTGGTTA
* * * *
26352 ATTAAATTGGGCTTATATTTATGTGATATAACCT-AGTTTAAAGGGTTTAAACTA
129 ATCAAATTAGGCTTATATTCATGTGATATAACCTAAGTTTAAAGGGGTT-AACTA
* * * *
26406 CTGATTTTAGGCTTAATTAATCAATTAGGCCGAAATCACAAAAACCCTAATTTATCAAGCTAGCC
1 CTGATTTT-GGCTTAATTAATCAATTAGGCCGAAATCACAAAAACCCTAACTCACCAAGCAAGCC
* * * * *
26471 AATTTGCCG-CTAAGTTGCAATTTGTGCAAAAAAGGGTTCGGC-CTATTTGGGTTTGCTTGATTT
65 AATTTGCCGCCTAAGTTGCAATTTGTGCAAAAAAGGGCTCGGCTC-ATTAGGGGTAGCTTG-GTT
* * * * * ** *
26534 CATCAAATTAGGTTTATGTTCATGTGATATGACCTAATTTTGGAGGGGTTATCTA
128 AATCAAATTAGGCTTATATTCATGTGATATAACCTAAGTTTAAAGGGGTTAACTA
26589 CTGATTCTTGGC-TAATTTAATCAATTAGGCCGAAA
1 CTGATT-TTGGCTTAA-TTAATCAATTAGGCCGAAA
26624 ATTACAAGAA
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
181 1 0.01
182 48 0.26
183 121 0.66
184 13 0.07
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35
Consensus pattern (182 bp):
CTGATTTTGGCTTAATTAATCAATTAGGCCGAAATCACAAAAACCCTAACTCACCAAGCAAGCCA
ATTTGCCGCCTAAGTTGCAATTTGTGCAAAAAAGGGCTCGGCTCATTAGGGGTAGCTTGGTTAAT
CAAATTAGGCTTATATTCATGTGATATAACCTAAGTTTAAAGGGGTTAACTA
Found at i:28328 original size:19 final size:18
Alignment explanation
Indices: 28304--28339 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
28294 TGAAGATTTC
28304 TTGAAGATAATTTGAAGAT
1 TTGAAGATAA-TTGAAGAT
*
28323 TTGAAGATCATTGAAGA
1 TTGAAGATAATTGAAGA
28340 ATTATTTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33
Consensus pattern (18 bp):
TTGAAGATAATTGAAGAT
Found at i:29954 original size:2 final size:2
Alignment explanation
Indices: 29947--29971 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
29937 AAATCATACA
29947 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.