Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006931.1 Corchorus capsularis cultivar CVL-1 contig06952, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54441

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
572--601
2
14.5
2
93
6
51
46
3
0
50
1.18
6492--6528
2
18.0
2
94
5
65
48
0
2
48
1.15
7862--7892
15
2.0
16
93
6
55
58
0
6
35
1.24
8771--8801
2
16.0
2
93
6
55
48
0
0
51
1.00
9415--9509
33
3.1
31
77
16
90
53
5
5
35
1.46
9395--9488
23
3.9
23
74
16
82
52
5
6
36
1.50
9390--9501
52
2.1
54
80
9
142
54
5
5
34
1.46
9461--9516
15
3.7
15
70
13
51
58
3
3
33
1.32
9461--9522
13
4.2
14
73
15
54
56
4
4
33
1.42
10796--10954
79
2.0
79
100
0
318
43
7
10
38
1.67
18923--18957
9
3.9
9
100
0
70
0
45
0
54
0.99
21127--21169
19
2.3
19
95
0
77
27
9
41
20
1.83
24017--24048
14
2.2
15
94
5
57
50
6
3
40
1.43
25343--25432
41
2.3
38
77
9
92
48
1
1
48
1.15
26232--26281
2
24.5
2
88
8
66
48
0
6
46
1.27
30366--30894
46
12.0
46
76
13
445
15
26
19
38
1.91
30510--30843
40
7.9
40
77
10
290
16
27
19
36
1.93
30460--30892
86
5.0
86
81
9
497
15
26
19
38
1.91
39165--39206
21
2.0
21
95
0
75
19
21
19
40
1.92
42361--42425
33
2.0
33
84
3
87
49
15
12
23
1.78
46504--47148
320
2.0
321
99
0
1283
42
15
16
24
1.88
53959--54028
15
4.2
15
70
21
50
45
0
1
52
1.09

Tables:   1

The End!