Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006933.1 Corchorus capsularis cultivar CVL-1 contig06954, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57264

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
698--782
40
2.1
40
93
0
143
42
15
14
28
1.85
2426--2520
50
1.9
48
85
10
129
31
13
12
42
1.82
7598--7703
27
3.8
26
77
14
104
24
19
0
54
1.50
7650--7702
16
3.3
16
94
0
97
26
16
1
54
1.53
7725--7787
19
3.6
18
76
20
62
23
22
0
53
1.46
7623--7767
59
2.5
57
81
9
143
23
21
1
53
1.53
7724--7816
33
2.8
34
87
7
122
19
25
0
54
1.44
7775--7912
60
2.3
58
85
6
179
15
24
1
58
1.45
8050--8189
38
3.7
38
78
14
148
26
17
5
50
1.69
8159--8248
29
3.2
29
64
20
73
23
20
10
46
1.80
8146--8416
55
4.8
55
80
8
317
24
19
8
47
1.76
8186--8402
119
1.8
119
89
0
344
24
19
7
47
1.75
8380--8635
37
7.2
36
73
15
169
28
16
7
48
1.72
8460--8580
62
2.0
62
83
6
156
28
14
7
48
1.71
8522--8635
38
3.1
38
89
3
178
27
14
6
51
1.66
9166--9192
13
2.1
13
100
0
54
70
7
0
22
1.12
10052--10113
23
2.7
23
82
2
70
53
8
38
0
1.31
12843--12869
2
13.5
2
100
0
54
51
0
0
48
1.00
13167--13221
20
2.8
19
81
10
67
38
1
10
49
1.49
13189--13230
2
21.0
2
85
9
59
45
0
4
50
1.23
15333--15385
25
2.1
25
89
0
79
66
13
11
9
1.46
15448--15493
22
2.1
22
95
0
83
54
4
19
21
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18145--18188
21
2.2
20
83
4
52
31
6
4
56
1.46
18439--18480
21
2.0
21
90
9
68
30
14
2
52
1.54
21765--21810
24
1.9
24
95
0
83
45
21
10
21
1.82
21828--21871
21
2.1
21
82
0
52
29
6
4
59
1.44
23130--23359
116
2.0
117
89
0
354
28
23
17
30
1.97
28165--28319
77
2.0
77
98
0
301
40
6
21
31
1.78
34381--34593
8
27.4
8
66
19
60
59
1
11
27
1.42
34505--34569
17
4.2
17
81
16
72
58
3
9
29
1.44
34517--34569
27
2.0
27
85
7
72
60
3
7
28
1.41
34496--34649
22
6.6
22
69
17
80
59
2
12
24
1.46
36390--36415
1
26.0
1
100
0
52
0
0
0
100
0.00
39056--39120
17
4.2
16
79
16
59
32
7
3
56
1.43
39078--39128
17
2.7
20
70
20
54
33
9
1
54
1.44
39169--39322
4
38.5
4
73
10
73
27
5
1
64
1.27
39269--39309
21
2.0
21
85
0
55
29
7
2
60
1.36

Tables:   1

The End!