Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000694.1 Corchorus capsularis cultivar CVL-1 contig00694, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4160
ACGTcount: A:0.33, C:0.19, G:0.15, T:0.32


Found at i:2076 original size:34 final size:30

Alignment explanation


    Indices: 2011--2097  Score: 95
    Period size: 31  Copynumber: 2.7  Consensus size: 30

       2001 AATCATATGC

                                           
       2011 AAGAATTTAAATATTATTTTTACCAAAAAAA
          1 AAGAATTTAAATATTATTTTTA-CAAAAAAA

                                      *        
       2042 AAGAATTTAAATATTATTAATTGTGAAAAGAAAAA
          1 AAGAATTTAAATATTATT--TT-T-ACAA-AAAAA

                            *     
       2077 AAG-ATTTAAATATTAATTTTA
          1 AAGAATTTAAATATTATTTTTA

       2098 ATACATCTTG


Statistics
Matches: 49,  Mismatches: 2, Indels: 11
        0.79            0.03        0.18

Matches are distributed among these distances:
  30    1  0.02
  31   19  0.39
  32    2  0.04
  33    2  0.04
  34   16  0.33
  35    9  0.18

ACGTcount: A:0.54, C:0.02, G:0.07, T:0.37


Consensus pattern (30 bp):   
AAGAATTTAAATATTATTTTTACAAAAAAA
Done.