Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006943.1 Corchorus capsularis cultivar CVL-1 contig06964, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40898

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1750--1854
55
1.9
55
83
11
135
32
18
18
31
1.94
1913--2064
60
2.5
60
83
5
182
28
15
17
37
1.91
6398--6436
20
1.9
20
89
5
60
58
7
2
30
1.39
6448--6599
74
2.1
74
93
0
259
40
9
28
20
1.84
11908--11992
44
1.9
45
87
2
127
38
15
24
21
1.92
12571--12600
15
2.0
15
93
0
51
43
30
13
13
1.82
15530--15625
33
2.9
33
84
3
122
40
38
13
7
1.72
15567--15654
32
2.8
32
82
3
97
40
39
10
9
1.71
15574--15628
16
3.5
16
80
11
69
43
40
9
7
1.64
15581--15656
16
4.8
16
74
9
66
40
40
10
7
1.69
18281--18369
31
2.9
30
86
5
124
21
23
24
30
1.99
18873--19237
103
3.5
105
88
6
519
41
9
9
40
1.69
21844--21874
2
15.5
2
100
0
62
48
0
0
51
1.00
21942--22543
300
2.0
300
99
0
1195
30
14
24
31
1.94
34258--34291
2
17.0
2
100
0
68
50
0
0
50
1.00
35230--35285
3
18.7
3
92
7
96
35
0
0
64
0.94
36090--36124
2
17.0
2
94
5
61
48
2
0
48
1.16
36264--36299
13
2.6
14
86
4
56
36
13
2
47
1.58
40590--40615
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!