Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006948.1 Corchorus capsularis cultivar CVL-1 contig06969, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37049

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1147--1191
15
2.9
15
83
6
54
33
0
13
53
1.40
3666--3762
48
2.0
48
95
0
176
22
27
10
39
1.87
8706--8741
14
2.7
13
83
8
54
50
8
13
27
1.71
11713--11743
10
3.1
10
100
0
62
90
0
9
0
0.46
12004--12033
15
1.9
16
93
6
53
13
43
0
43
1.43
14812--14865
28
1.9
28
92
0
90
31
9
33
25
1.88
17315--18133
409
2.0
409
100
0
1638
30
9
16
43
1.80
27711--27768
27
2.1
27
80
0
62
31
3
34
31
1.74
32255--32291
17
2.2
17
95
0
65
27
13
37
21
1.91
34498--34549
22
2.4
22
81
9
63
38
13
5
42
1.68
34629--34670
22
1.9
22
85
9
59
28
11
7
52
1.64
34693--34781
45
2.0
45
84
4
117
38
17
11
32
1.86
34643--35034
22
18.0
22
70
17
178
35
16
10
37
1.83
34899--35016
60
2.0
61
87
1
175
34
17
7
39
1.79
35535--35640
44
2.4
45
84
6
146
35
12
9
42
1.75
35448--35679
22
10.5
22
73
13
122
34
13
10
41
1.79
35724--35953
22
10.5
22
69
10
105
37
18
8
35
1.82
35800--35955
44
3.5
44
76
11
122
35
19
10
35
1.85
35728--35930
66
3.1
65
80
9
189
37
18
9
34
1.83
35808--35956
66
2.3
66
83
4
176
36
18
10
34
1.86

Tables:   1

The End!