Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006949.1 Corchorus capsularis cultivar CVL-1 contig06970, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33499

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33--70
17
2.2
17
90
0
58
47
5
2
44
1.39
1167--1292
22
5.7
22
76
10
114
35
8
18
37
1.82
1471--1550
22
3.6
22
79
3
81
41
10
13
35
1.78
1657--2125
22
21.6
22
69
13
222
37
10
15
36
1.83
1844--1951
45
2.4
45
83
10
125
36
9
16
37
1.81
2107--2148
22
1.9
22
85
0
57
57
4
11
26
1.54
9626--9849
22
10.1
22
75
6
112
35
16
9
38
1.80
9638--9849
44
4.8
43
77
6
149
35
15
9
39
1.80
9974--10098
22
5.7
22
74
12
96
32
12
10
44
1.77
9949--10119
44
3.9
44
77
6
161
34
12
9
43
1.76
9993--10121
66
2.0
66
83
6
163
34
13
10
42
1.77
10037--10119
22
3.8
21
73
12
78
37
12
10
39
1.78
9949--10115
88
1.9
88
82
4
212
33
12
10
43
1.76
10220--10340
22
5.5
22
72
14
74
34
17
9
38
1.81
10378--10427
22
2.3
22
85
0
73
46
22
4
28
1.70
10402--10517
44
2.6
45
86
10
134
37
16
11
34
1.84
10436--10561
22
5.7
22
73
15
109
37
15
11
35
1.84
10432--10521
44
2.1
44
93
2
155
34
18
12
34
1.88
11833--11898
30
2.2
30
84
10
82
48
7
13
30
1.70
12739--12954
108
2.0
108
97
0
405
31
21
15
31
1.94
13264--13309
20
2.2
22
84
11
69
43
28
0
28
1.55
13270--13310
20
2.0
21
95
4
75
41
24
0
34
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16273--16312
19
2.2
18
86
4
53
30
20
5
45
1.72
17395--17495
53
1.9
53
85
2
141
40
11
13
33
1.82
18563--18602
19
2.1
19
100
0
80
57
10
5
27
1.52
23739--23787
24
2.0
24
92
0
80
6
26
12
55
1.60
24999--25041
14
3.2
14
80
6
54
16
13
4
65
1.43
29394--29445
17
3.1
17
88
5
70
11
28
3
55
1.53
29641--29710
30
2.3
31
87
5
97
21
27
5
45
1.74
29743--29908
33
4.8
35
84
9
225
33
18
20
28
1.96
29747--29908
69
2.3
69
94
0
279
32
18
20
27
1.96
31742--31777
16
2.2
16
95
0
63
47
2
2
47
1.31

Tables:   1

The End!