Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006950.1 Corchorus capsularis cultivar CVL-1 contig06971, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9778
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.31


Found at i:181 original size:19 final size:18

Alignment explanation


    Indices: 157--192  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

        147 TGAAGATTTC

                               
        157 TTGAAGATAATTTGAAGAT
          1 TTGAAGATAA-TTGAAGAT

                    *        
        176 TTGAAGATCATTGAAGA
          1 TTGAAGATAATTGAAGA

        193 ATTATTTTAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33


Consensus pattern (18 bp):   
TTGAAGATAATTGAAGAT

Found at i:9622 original size:19 final size:18

Alignment explanation


    Indices: 9598--9633  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       9588 TGAAGATTTC

                               
       9598 TTGAAGATAATTTGAAGAT
          1 TTGAAGATAA-TTGAAGAT

                    *        
       9617 TTGAAGATCATTGAAGA
          1 TTGAAGATAATTGAAGA

       9634 ATTATTTCAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.03, G:0.22, T:0.33


Consensus pattern (18 bp):   
TTGAAGATAATTGAAGAT
Done.