Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006951.1 Corchorus capsularis cultivar CVL-1 contig06972, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42440

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2093--2166
31
2.4
31
95
0
130
47
2
32
17
1.62
2296--2330
2
17.0
2
94
5
61
48
0
2
48
1.16
2403--2511
37
2.7
39
73
21
118
21
10
11
56
1.64
2420--2532
37
3.2
37
77
11
137
19
11
10
58
1.62
4779--4815
13
2.8
13
87
0
56
16
43
8
32
1.77
5710--5743
15
2.3
15
100
0
68
52
11
29
5
1.61
9217--9246
15
2.0
15
100
0
60
33
13
6
46
1.69
10080--10122
20
2.2
20
82
0
50
20
4
11
62
1.46
12119--12161
22
2.0
21
81
4
50
23
4
20
51
1.66
13439--13474
19
1.9
18
88
5
54
41
5
22
30
1.76
14509--14587
35
2.2
38
84
6
101
18
10
8
62
1.53
19364--19388
6
4.2
6
100
0
50
36
0
0
64
0.94
22378--22487
35
3.1
35
67
3
94
18
10
22
49
1.77
25608--25644
18
2.1
18
89
0
56
24
5
21
48
1.71
29707--29811
16
6.7
15
77
9
75
11
17
33
38
1.85
29707--29796
16
5.7
16
78
1
83
11
16
33
38
1.84
29729--29816
32
2.8
31
81
5
104
12
20
32
34
1.90
30060--30141
42
2.0
42
92
0
137
36
3
18
41
1.68
33841--33873
2
16.5
2
100
0
66
48
0
0
51
1.00
34283--34307
7
3.6
7
100
0
50
12
28
28
32
1.92
39034--39141
33
3.3
33
84
2
119
8
26
40
24
1.83

Tables:   1

The End!