Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006952.1 Corchorus capsularis cultivar CVL-1 contig06973, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79376

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
245--367
51
2.4
51
86
0
165
24
37
14
23
1.92
331--527
51
3.9
51
91
0
277
17
40
16
24
1.90
3592--3691
32
3.1
32
82
5
139
29
19
31
21
1.97
3817--3897
34
2.4
33
77
6
81
24
22
22
30
1.99
8509--8544
6
6.0
6
96
0
63
13
69
0
16
1.19
10230--10561
168
2.0
163
91
4
540
31
12
18
36
1.89
15380--15405
7
3.7
7
100
0
52
73
0
15
11
1.11
22057--22095
18
2.2
18
85
0
51
56
20
12
10
1.65
30275--30299
13
1.9
13
100
0
50
88
0
4
8
0.64
31804--31845
19
2.2
19
100
0
84
38
4
16
40
1.70
32574--32622
22
2.3
21
86
6
64
24
28
18
28
1.98
36921--36988
33
2.1
33
97
0
127
30
4
25
39
1.75
59183--59207
6
4.2
6
100
0
50
48
16
36
0
1.46

Tables:   1

The End!