Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006953.1 Corchorus capsularis cultivar CVL-1 contig06974, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26034

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39--72
2
17.0
2
100
0
68
50
0
0
50
1.00
1035--1095
32
1.9
31
87
9
88
32
6
6
54
1.52
1190--1214
12
2.1
12
100
0
50
52
8
16
24
1.70
1388--1422
17
2.1
17
89
5
54
54
5
5
34
1.48
1565--1598
1
34.0
1
100
0
68
0
0
0
100
0.00
9500--9525
13
2.0
13
100
0
52
53
15
15
15
1.73
11126--11158
11
3.0
11
100
0
66
18
0
0
81
0.68
12416--12515
20
4.6
23
84
14
149
19
15
26
40
1.90
12416--12515
43
2.3
43
98
0
191
19
15
26
40
1.90
13056--13104
23
2.1
23
81
7
55
51
6
2
40
1.38
13090--13118
2
14.5
2
100
0
58
51
0
0
48
1.00
14834--14877
19
2.4
19
88
3
63
13
18
31
36
1.90
16900--16929
15
1.9
16
93
6
53
43
0
3
53
1.17
17264--21410
332
12.5
331
78
6
3604
32
13
16
37
1.87
24435--24473
5
8.2
5
83
11
55
23
17
0
58
1.38
24439--24476
18
2.1
18
95
0
67
23
18
0
57
1.40

Tables:   1

The End!