Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006958.1 Corchorus capsularis cultivar CVL-1 contig06979, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36176

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2360--2465
21
5.2
20
79
10
115
53
2
20
22
1.58
2360--2467
41
2.6
42
95
1
191
54
2
20
22
1.57
2994--3058
32
2.0
32
85
5
87
52
4
23
20
1.65
3045--3085
21
1.9
22
90
5
66
58
7
17
17
1.60
3045--3165
22
5.6
22
69
15
76
56
4
22
16
1.59
3038--3104
21
3.1
21
81
10
64
52
5
22
19
1.67
3098--3131
10
3.4
10
87
0
50
73
0
23
2
0.97
3145--3179
15
2.3
15
100
0
70
48
5
20
25
1.71
3123--3200
37
2.1
36
88
2
111
51
6
21
20
1.70
7012--7122
32
3.6
32
70
20
108
25
8
21
45
1.79
11176--11206
14
2.3
13
94
5
53
16
16
3
64
1.42
11225--11255
2
15.5
2
100
0
62
48
0
0
51
1.00
15183--15211
2
14.5
2
100
0
58
48
0
0
51
1.00
17019--17125
33
3.2
33
84
2
135
23
38
28
9
1.86
18815--18886
20
3.5
20
78
12
83
54
2
20
22
1.58
18790--18895
21
5.2
20
76
10
106
53
1
21
22
1.55
18790--18897
41
2.6
42
94
1
182
54
1
21
22
1.54
19424--19488
32
2.0
32
85
5
87
52
4
21
21
1.65
19471--19595
22
5.8
22
73
10
98
56
4
21
16
1.58
19528--19561
10
3.4
10
87
0
50
73
0
23
2
0.97
19575--19609
15
2.3
15
100
0
70
48
5
20
25
1.71
19552--19630
37
2.2
36
83
2
104
53
5
21
20
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24116--24140
13
1.9
13
100
0
50
8
0
12
80
0.92
25424--25595
87
2.0
86
86
6
240
38
23
7
30
1.83
25424--25620
87
2.3
88
82
7
233
36
24
7
32
1.83
27358--27540
32
5.5
32
85
7
240
27
19
7
44
1.78
27358--27554
68
2.9
66
89
6
281
28
19
7
44
1.77
27546--27837
41
7.1
41
88
2
408
22
20
9
47
1.79
27831--27971
40
3.6
39
84
6
171
26
16
12
45
1.82
27947--28038
41
2.2
41
82
1
112
22
18
11
46
1.82
30429--30467
14
2.7
14
96
4
69
58
28
12
0
1.34
32553--32590
20
1.9
20
94
0
67
55
10
0
34
1.34
32583--32623
2
21.5
2
80
9
50
48
4
0
46
1.23
32592--32654
20
3.2
20
80
6
58
58
6
0
34
1.23
34117--34366
128
1.9
129
86
4
353
32
12
11
44
1.77

Tables:   1

The End!