Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006959.1 Corchorus capsularis cultivar CVL-1 contig06980, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47379

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7431--7469
20
1.9
21
89
5
62
76
2
15
5
1.06
16802--16919
41
2.9
41
100
0
236
48
19
9
22
1.77
21977--22311
35
9.7
35
82
3
345
36
9
19
34
1.85
21980--22093
16
6.6
16
71
14
75
37
7
15
38
1.77
21979--22311
136
2.4
136
83
5
375
36
9
19
34
1.85
24229--24535
141
2.2
140
91
2
483
37
9
9
43
1.69
25488--25512
13
1.9
13
100
0
50
32
8
20
40
1.81
27482--27730
135
1.8
137
82
6
328
27
17
6
47
1.73
28076--28105
1
30.0
1
100
0
60
0
0
0
100
0.00
36310--36349
2
21.0
2
90
10
66
52
0
0
47
1.00
36310--36349
13
3.0
14
89
10
66
52
0
0
47
1.00
36310--36349
17
2.4
17
100
0
80
52
0
0
47
1.00

Tables:   1

The End!