Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006960.1 Corchorus capsularis cultivar CVL-1 contig06981, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23889

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8407--8528
49
2.5
48
85
5
156
48
5
16
29
1.69
10991--11049
30
1.9
31
86
3
84
32
15
3
49
1.61
10991--11056
30
2.1
31
83
5
80
33
13
4
48
1.63
11351--11393
11
3.9
11
90
0
68
46
6
4
41
1.51
11347--11393
22
2.1
22
96
0
85
46
6
4
42
1.48
12313--12366
20
2.5
22
85
5
76
44
9
14
31
1.77
12466--12519
22
2.5
22
87
0
72
48
9
7
35
1.63
12415--12543
44
2.9
44
73
11
120
44
9
11
34
1.73
12559--12807
22
12.0
21
64
20
85
40
7
15
35
1.76
12622--12746
66
1.9
64
80
9
146
42
8
14
34
1.77
12669--12764
44
2.2
44
83
7
115
45
8
15
30
1.75
12792--12849
25
2.4
25
88
5
84
41
3
13
41
1.62
12817--12896
22
3.6
22
75
14
58
42
8
10
38
1.69
12860--12902
22
2.0
22
90
0
68
37
9
11
41
1.74
13041--13097
22
2.6
22
83
5
62
47
7
15
29
1.72
13878--13934
28
2.0
28
100
0
114
33
24
7
35
1.82
16578--16620
16
2.8
15
75
6
50
76
0
4
18
0.95
20531--21247
152
4.7
153
88
1
1035
23
18
17
40
1.91
22115--22243
33
3.9
33
89
2
170
10
30
37
21
1.86
22354--23049
153
4.6
152
89
2
1006
23
19
18
38
1.93
22353--23049
307
2.3
305
86
4
1028
23
19
18
38
1.93
23160--23272
33
3.4
33
88
0
118
23
36
29
10
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23190--23299
33
3.3
33
87
5
107
24
37
28
10
1.88

Tables:   1

The End!