Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006962.1 Corchorus capsularis cultivar CVL-1 contig06983, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6097
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:4050 original size:2 final size:2

Alignment explanation


    Indices: 4043--4077  Score: 70
    Period size: 2  Copynumber: 17.5  Consensus size: 2

       4033 TTTCTATTGC

                                                                
       4043 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T

       4078 GTCTTCTTCC


Statistics
Matches: 33,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   33  1.00

ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51


Consensus pattern (2 bp):   
TA

Found at i:5344 original size:14 final size:14

Alignment explanation


    Indices: 5325--5351  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       5315 CAAATTTATT

                          
       5325 TTTCTCTTTTTCCC
          1 TTTCTCTTTTTCCC

                         
       5339 TTTCTCTTTTTCC
          1 TTTCTCTTTTTCC

       5352 TTTTTTTTTT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67


Consensus pattern (14 bp):   
TTTCTCTTTTTCCC
Done.