Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006963.1 Corchorus capsularis cultivar CVL-1 contig06984, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19537

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1556--1588
16
2.1
16
94
0
57
15
12
33
39
1.84
3635--3753
36
3.1
36
64
17
96
23
5
14
56
1.60
3598--3753
78
2.0
78
100
0
312
23
6
15
55
1.63
5964--6082
16
7.5
15
77
16
109
33
38
19
8
1.82
5964--6081
32
3.7
32
94
0
191
33
38
19
8
1.82
6588--6670
42
2.0
42
92
0
139
39
18
4
37
1.72
6910--7029
16
7.6
16
79
7
120
38
35
17
8
1.80
6895--7002
32
3.4
32
73
11
105
36
37
18
8
1.81
6895--7025
48
2.8
48
80
8
135
36
37
17
8
1.80
7454--7508
16
3.2
16
78
14
65
45
10
1
41
1.50
8604--8651
14
3.2
14
85
8
60
27
10
0
62
1.27
8609--8651
14
2.8
16
82
17
63
25
11
0
62
1.29
8677--8710
2
17.5
2
87
6
52
47
0
2
50
1.16
8677--8718
13
3.3
13
86
3
59
45
0
2
52
1.13
15094--15134
18
2.3
18
100
0
82
29
24
17
29
1.97
15342--15381
21
2.0
20
85
5
53
57
2
2
37
1.26
16313--16380
20
3.3
20
80
12
68
27
0
1
70
0.96
16344--16389
22
2.1
22
95
0
83
28
0
4
67
1.10
16324--16448
26
5.2
24
69
19
84
34
0
4
61
1.15
16536--16577
22
2.0
20
90
9
66
38
0
2
59
1.10

Tables:   1

The End!