Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006964.1 Corchorus capsularis cultivar CVL-1 contig06985, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54823

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
649--963
174
1.8
175
90
3
519
35
22
5
36
1.76
1304--1431
12
10.9
12
76
11
104
36
19
27
16
1.93
1321--1359
19
2.1
19
90
0
60
43
12
33
10
1.77
2278--2302
10
2.5
10
100
0
50
36
28
8
28
1.85
2629--2694
13
4.8
13
75
17
62
28
0
16
54
1.42
2719--2817
32
3.1
32
83
2
128
15
31
38
15
1.88
3228--3323
8
13.7
7
80
13
83
44
2
1
52
1.19
3244--3320
2
42.5
2
72
27
66
46
2
0
50
1.15
3241--3323
36
2.3
37
83
8
100
45
2
0
51
1.14
3230--3323
44
2.2
42
87
9
129
44
2
1
52
1.20
7359--7383
13
1.9
13
100
0
50
32
8
28
32
1.86
9268--9348
22
3.5
24
69
26
68
38
2
2
56
1.26
9298--9346
25
2.0
25
84
8
64
38
0
2
59
1.09
10109--10230
26
4.7
26
75
15
126
17
13
39
30
1.87
10109--10230
53
2.3
52
88
4
174
17
13
39
30
1.87
10270--10314
15
3.0
15
86
0
63
13
22
46
17
1.83
11387--11416
15
2.0
15
93
0
51
56
0
0
43
0.99
12399--12429
16
1.9
16
93
0
53
35
9
0
54
1.33
12741--12878
16
8.7
16
87
2
181
7
21
38
33
1.81
12712--12878
48
3.5
48
86
4
205
8
21
35
34
1.85
13325--13372
21
2.3
21
88
0
78
56
6
8
29
1.53
13480--13614
16
8.4
16
75
8
114
8
20
37
34
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
13481--13614
48
2.8
48
80
4
137
8
20
37
34
1.82
14140--14221
41
2.0
43
90
9
134
41
15
9
32
1.80
14746--14794
20
2.4
19
77
12
53
32
10
6
51
1.61
14836--15009
87
2.0
85
89
2
267
32
10
9
47
1.70
14999--15053
22
2.5
22
77
11
60
29
9
12
49
1.72
15072--15117
20
2.2
21
88
11
69
34
6
8
50
1.59
15526--15564
20
2.0
20
84
0
51
33
7
10
48
1.66
30709--31995
529
2.5
522
91
2
2097
36
13
16
33
1.88
39300--39330
15
2.1
15
94
5
55
32
0
6
61
1.21
48738--52396
527
6.9
529
92
0
6015
35
14
16
32
1.89
53441--53519
37
2.1
38
81
6
99
15
40
37
6
1.72
53631--53672
20
2.0
21
86
4
59
61
0
23
14
1.32
54333--54393
26
2.4
25
74
17
63
32
1
8
57
1.38

Tables:   1

The End!