Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01006970.1 Corchorus capsularis cultivar CVL-1 contig06991, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6176
ACGTcount: A:0.32, C:0.19, G:0.18, T:0.31


Found at i:843 original size:11 final size:11

Alignment explanation


    Indices: 811--844  Score: 52
    Period size: 11  Copynumber: 3.1  Consensus size: 11

        801 ATGGTCTTCA

                       
        811 AATCTTCAAA-
          1 AATCTTCAAAT

                        
        821 ATATCTTCAAAT
          1 A-ATCTTCAAAT

                       
        833 AATCTTCAAAT
          1 AATCTTCAAAT

             
        844 A
          1 A

        845 CGAACTTCGA


Statistics
Matches: 22,  Mismatches: 0, Indels: 3
        0.88            0.00        0.12

Matches are distributed among these distances:
  10    1  0.05
  11   20  0.91
  12    1  0.05

ACGTcount: A:0.47, C:0.18, G:0.00, T:0.35


Consensus pattern (11 bp):   
AATCTTCAAAT
Done.