Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01006972.1 Corchorus capsularis cultivar CVL-1 contig06993, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62093

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17159--17235
29
2.5
31
79
10
86
37
25
3
32
1.75
17641--17677
18
2.1
18
89
0
56
27
24
13
35
1.93
25638--25671
18
1.9
17
88
5
50
55
23
5
14
1.61
27933--28007
31
2.5
29
82
6
96
36
20
4
40
1.71
27944--28003
31
1.9
31
96
0
111
35
20
5
40
1.74
30240--30310
27
2.5
28
81
4
90
29
1
0
69
0.98
31707--31783
11
6.5
11
75
18
57
70
1
25
2
1.08
31704--31783
17
4.8
16
69
17
56
70
1
26
2
1.08
31702--31765
14
4.6
14
74
14
53
70
1
28
0
0.97
36227--36318
25
3.8
25
65
7
73
38
7
5
48
1.55
39150--39192
2
21.5
2
95
0
77
2
48
0
48
1.14
57773--57805
17
1.9
17
88
11
50
12
15
0
72
1.12
58043--59065
438
2.4
430
82
4
1180
26
13
17
43
1.85
61303--61343
18
2.3
18
91
8
66
39
0
2
58
1.11
61748--61778
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!